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Sample GSM872192 Query DataSets for GSM872192
Status Public on Mar 14, 2012
Title BMM_F2D_102_F
Sample type RNA
 
Source name Bone marrow derived macrophages from female DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: female
strain: DBA/2JxAKR/J
cell type: bone marrow derived macrophages (BMM)
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Bone marrow was flushed with DMEM and cells were grown for 10-14 days in Bone marrow macrophages complete media
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) hsuj@ccf.org
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 4.2576582705264 28.32755 7.25808655369058 0.6578947 39
ILMN_2956159 13.5848431628886 8635.275 1896.17378496761 0 40
ILMN_2704576 4.49331364055601 30.27547 10.2557159918005 0.3721805 33
ILMN_3135931 13.61103989448 8687.227 2226.17725578793 0 30
ILMN_2516699 13.9370770625561 10511.86 2665.29727699246 0 23
ILMN_2964873 14.1316861494688 12608.73 3964.63749293509 0 29
ILMN_1377920 13.7532623321719 9163.256 2846.996 0 100
ILMN_2747959 5.4208090451817 41.55108 17.0801473698876 0.006265664 30
ILMN_2666018 4.61301352397556 31.29679 9.96674725699172 0.2380952 33
ILMN_2851231 12.925453261691 4950.311 1493.88326237269 0 28
ILMN_2948086 12.4374580458286 3502.317 1111.34259465178 0 44
ILMN_2675747 12.8638313026327 4814.945 1439.22539496415 0 47
ILMN_1258988 11.3519252764645 1767.033 421.662838279421 0 43
ILMN_2876066 14.0772940094986 12490.45 2413.92312161639 0 34
ILMN_2588052 14.0303542221077 11954.46 3340.05290174392 0 52
ILMN_2658908 3.89056222587604 25.78107 8.14035330687207 0.9135338 23
ILMN_2876071 13.9824632190025 11815.41 2967.02457934215 0 32
ILMN_2696977 13.1807706602325 5943.276 1483.04651216466 0 39
ILMN_2740432 12.0659131897458 2790.986 923.979 0 36
ILMN_3126986 13.1439082742342 5803.182 1520.08365377436 0 42

Total number of rows: 25697

Table truncated, full table size 1646 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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