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Sample GSM872193 Query DataSets for GSM872193
Status Public on Mar 14, 2012
Title BMM_F2D_103_F
Sample type RNA
 
Source name Bone marrow derived macrophages from female DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: female
strain: DBA/2JxAKR/J
cell type: bone marrow derived macrophages (BMM)
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Bone marrow was flushed with DMEM and cells were grown for 10-14 days in Bone marrow macrophages complete media
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) hsuj@ccf.org
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 4.10080237612557 25.52287 5.08091013852118 0.7694235 31
ILMN_2956159 13.3213665215877 5440.826 1488.03138962288 0 28
ILMN_2704576 4.77325363836148 30.31754 6.99601337678999 0.1541353 50
ILMN_3135931 13.4881878545018 6365.243 1268.07285214212 0 34
ILMN_2516699 13.6361716421311 7119.07 1907.92670611939 0 40
ILMN_2964873 13.7532623321719 7518.888 2416.16066256472 0 41
ILMN_1377920 13.3818472839267 5926.171 2189.2277 0 121
ILMN_2747959 8.15751427965472 143.2405 67.6832 0 25
ILMN_2666018 4.6646321488841 29.51824 10.3711253281383 0.2255639 48
ILMN_2851231 12.4954960788457 2907.996 1088.84889633945 0 43
ILMN_2948086 11.9192490569433 1841.919 495.435432420751 0 40
ILMN_2675747 12.7760592271351 3563.65 886.114093552743 0 55
ILMN_1258988 10.6227065681159 755.1271 264.397671026693 0 52
ILMN_2876066 14.4496762423788 15207.63 3942.00109529163 0 40
ILMN_2588052 13.61103989448 7049.833 2028.38975109851 0 83
ILMN_2658908 4.12486229010564 25.67545 8.6953335028338 0.7406015 31
ILMN_2876071 14.3217164163927 12637.49 3598.27986412692 0 44
ILMN_2696977 13.3602548714397 5675.624 1888.69846407023 0 29
ILMN_2740432 12.1029995300863 2182.63 854.633307757637 0 51
ILMN_3126986 12.9559107990732 4033.623 1154.73189690161 0 42

Total number of rows: 25697

Table truncated, full table size 1646 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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