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Sample GSM872195 Query DataSets for GSM872195
Status Public on Mar 14, 2012
Title BMM_F2D_105_F
Sample type RNA
 
Source name Bone marrow derived macrophages from female DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: female
strain: DBA/2JxAKR/J
cell type: bone marrow derived macrophages (BMM)
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Bone marrow was flushed with DMEM and cells were grown for 10-14 days in Bone marrow macrophages complete media
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) hsuj@ccf.org
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 4.94190423432883 33.69255 11.1454287960858 0.06641604 42
ILMN_2956159 13.7532623321719 8972.433 2127.63959306434 0 39
ILMN_2704576 4.7470076280706 31.84781 10.4448228118666 0.1704261 38
ILMN_3135931 13.6909941243974 8634.402 1531.00997029175 0 39
ILMN_2516699 13.7224347345669 8660.328 2320.89733305363 0 27
ILMN_2964873 14.0772940094986 11972.5 3361.50369337789 0 30
ILMN_1377920 13.61103989448 8189.178 2550.16420147196 0 128
ILMN_2747959 6.63148668812956 72.87904 25.5326329486655 0 37
ILMN_2666018 5.03373530911806 34.72113 13.8229878142426 0.04385965 47
ILMN_2851231 12.790033671571 4598.992 1166.71339126765 0 37
ILMN_2948086 12.1102947568089 2942.659 844.136233331564 0 45
ILMN_2675747 12.4612578608207 3962.31 1192.81548262686 0 44
ILMN_1258988 11.6496584702151 2041.405 510.662244618424 0 44
ILMN_2876066 14.3217164163927 14636.33 4159.57003368691 0 41
ILMN_2588052 13.8206889427679 10056.71 2558.48797965738 0 72
ILMN_2658908 4.46777501064205 29.48085 10.746395 0.414787 25
ILMN_2876071 14.1981373709814 13256.23 3536.74355143827 0 45
ILMN_2696977 12.9417732258916 5027.918 1328.95965378804 0 31
ILMN_2740432 11.8956897562477 2423.082 719.874805326732 0 45
ILMN_3126986 12.8790143649067 4845.228 1026.9490645598 0 24

Total number of rows: 25697

Table truncated, full table size 1645 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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