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Sample GSM872198 Query DataSets for GSM872198
Status Public on Mar 14, 2012
Title BMM_F2D_108_F
Sample type RNA
 
Source name Bone marrow derived macrophages from female DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: female
strain: DBA/2JxAKR/J
cell type: bone marrow derived macrophages (BMM)
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Bone marrow was flushed with DMEM and cells were grown for 10-14 days in Bone marrow macrophages complete media
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) hsuj@ccf.org
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 5.04633338002524 34.43402 12.5771802044883 0.04761905 43
ILMN_2956159 13.2638966003845 5906.631 1441.97517458087 0 42
ILMN_2704576 4.92080415669399 33.25034 10.395957502065 0.08145364 38
ILMN_3135931 13.6651114672082 8279.813 1926.48557838159 0 41
ILMN_2516699 13.7837814497459 8870.059 2816.75932574878 0 42
ILMN_2964873 13.7532623321719 8856.161 2773.26652133213 0 35
ILMN_1377920 13.1630855393705 5514.281 2090.94303623987 0 128
ILMN_2747959 9.53436705006719 449.8029 223.166149992104 0 38
ILMN_2666018 4.31424108975944 27.96011 7.96195808353906 0.5651629 33
ILMN_2851231 12.4849028623369 3306.133 898.235981783718 0 34
ILMN_2948086 11.6628062891144 1888.552 676.9734 0 36
ILMN_2675747 12.5946565335825 3735.314 1436.71051052643 0 48
ILMN_1258988 10.8844734829289 1129.846 281.468840318635 0 47
ILMN_2876066 14.4496762423788 12626.31 3066.26284417058 0 43
ILMN_2588052 13.4462459706025 6850.7 2515.32511607997 0 83
ILMN_2658908 4.83354339401181 32.39318 9.48919674145894 0.1115288 35
ILMN_2876071 14.1981373709814 11972.2 3676.67774705769 0 43
ILMN_2696977 13.1807706602325 5563.676 1819.27320414957 0 46
ILMN_2740432 12.0733125908269 2427.618 713.985673094391 0 45
ILMN_3126986 12.819512360874 4306.924 1141.259567834 0 41

Total number of rows: 25697

Table truncated, full table size 1645 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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