NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM872204 Query DataSets for GSM872204
Status Public on Mar 14, 2012
Title BMM_F2D_114_F
Sample type RNA
 
Source name Bone marrow derived macrophages from female DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: female
strain: DBA/2JxAKR/J
cell type: bone marrow derived macrophages (BMM)
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Bone marrow was flushed with DMEM and cells were grown for 10-14 days in Bone marrow macrophages complete media
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) hsuj@ccf.org
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 4.64170916398524 35.1647 12.144366 0.2130326 36
ILMN_2956159 13.2638966003845 8471.545 2075.781463414 0 41
ILMN_2704576 4.66222184609384 35.38945 9.58521143851298 0.1992481 40
ILMN_3135931 13.4881878545018 9631.302 2951.64067726486 0 34
ILMN_2516699 13.8538136213455 13273.6 3640.66367564783 0 44
ILMN_2964873 13.9370770625561 14309.81 3903.13544998441 0 52
ILMN_1377920 13.7532623321719 12193.22 3995.06497996309 0 110
ILMN_2747959 8.04047482989872 199.0685 81.4122444985507 0 38
ILMN_2666018 4.84960869271386 37.45922 11.4646651846606 0.10401 57
ILMN_2851231 12.9082577234049 6376.645 1676.532605126 0 44
ILMN_2948086 12.4954960788457 4465.565 1455.81950692442 0 47
ILMN_2675747 12.5073897372045 4467.43 1290.60840253257 0 42
ILMN_1258988 10.5821805873598 1182.086 417.682621562976 0 37
ILMN_2876066 14.0303542221077 15377.85 4476.87970788227 0 50
ILMN_2588052 13.8947964597709 14247.92 4128.48591525392 0 82
ILMN_2658908 4.35163967796534 32.33119 11.1793414634312 0.5200501 31
ILMN_2876071 14.1316861494688 15908.42 4718.8488287496 0 43
ILMN_2696977 13.1257171971427 7852.65 2479.17073587845 0 38
ILMN_2740432 12.1102947568089 3402.118 852.220938852174 0 47
ILMN_3126986 13.0539499344965 7373.195 2241.58888345272 0 43

Total number of rows: 25697

Table truncated, full table size 1645 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap