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Sample GSM872208 Query DataSets for GSM872208
Status Public on Mar 14, 2012
Title BMM_F2A_103_F
Sample type RNA
 
Source name Bone marrow derived macrophages from female DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: female
strain: DBA/2JxAKR/J
cell type: bone marrow derived macrophages (BMM)
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Bone marrow was flushed with DMEM and cells were grown for 10-14 days in Bone marrow macrophages complete media
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) hsuj@ccf.org
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 4.52471951530977 35.39863 11.8040313423963 0.3458647 51
ILMN_2956159 13.3602548714397 7864.885 2197.89609355362 0 33
ILMN_2704576 4.8513899371018 38.76898 11.6786668762267 0.1165414 35
ILMN_3135931 13.5106503771691 8668.071 2086.57707613011 0 32
ILMN_2516699 13.8538136213455 11086.26 2959.4076 0 36
ILMN_2964873 13.6651114672082 9972.475 2002.28187474309 0 39
ILMN_1377920 13.6361716421311 9862.526 3129.60360110196 0 124
ILMN_2747959 9.37590637622354 426.6209 125.226925211352 0 41
ILMN_2666018 5.11330693832609 41.72284 9.64247396238331 0.03508772 40
ILMN_2851231 12.5700329114737 4111.583 1044.54311807419 0 44
ILMN_2948086 12.1972056436141 3046.983 803.373090598173 0 46
ILMN_2675747 12.7481092613436 4689.07 1312.07356909051 0 47
ILMN_1258988 10.4039188825352 881.6537 225.279685737846 0 43
ILMN_2876066 14.3217164163927 15693.97 4543.25316874136 0 40
ILMN_2588052 14.0303542221077 12685.23 3665.5336440712 0 92
ILMN_2658908 5.68355943017575 50.00072 19.3460714176579 0.001253133 31
ILMN_2876071 14.2617429273087 15375.4 5381.06801133469 0 38
ILMN_2696977 13.3006311488776 7026.933 1697.88822393101 0 40
ILMN_2740432 11.9541778881108 2540.316 563.847263803803 0 33
ILMN_3126986 12.9417732258916 5530.071 1512.97270758369 0 48

Total number of rows: 25697

Table truncated, full table size 1645 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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