NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM872211 Query DataSets for GSM872211
Status Public on Mar 14, 2012
Title BMM_F2A_106_F
Sample type RNA
 
Source name Bone marrow derived macrophages from female DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: female
strain: DBA/2JxAKR/J
cell type: bone marrow derived macrophages (BMM)
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Bone marrow was flushed with DMEM and cells were grown for 10-14 days in Bone marrow macrophages complete media
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) hsuj@ccf.org
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 4.21361941566815 31.66967 9.63116327487106 0.6428571 41
ILMN_2956159 13.3213665215877 7995.814 1971.89947069159 0 31
ILMN_2704576 4.76220885600084 37.14079 12.9394565106393 0.1566416 54
ILMN_3135931 13.5106503771691 9642.665 2681.1764 0 49
ILMN_2516699 13.7532623321719 12139.37 3458.53327260965 0 45
ILMN_2964873 14.1981373709814 14874.93 3895.4628 0 36
ILMN_1377920 13.7837814497459 12763.45 3863.497 0 121
ILMN_2747959 9.73810026070972 629.1242 180.508570269226 0 29
ILMN_2666018 4.5290212490327 34.67761 10.435489599606 0.3095238 46
ILMN_2851231 12.4612578608207 4577.044 1537.9315466518 0 30
ILMN_2948086 12.3293037427371 4201.721 1297.41806476266 0 43
ILMN_2675747 12.5442356768257 4721.555 1504.06320468914 0 56
ILMN_1258988 10.0881025021216 788.7553 232.754506557333 0 51
ILMN_2876066 13.8538136213455 13761.13 3571.12593785127 0 43
ILMN_2588052 13.9824632190025 14283.71 3623.12113834741 0 86
ILMN_2658908 4.28868746342957 32.34742 13.2961597157236 0.5714286 28
ILMN_2876071 14.1316861494688 14695.58 5428.77520290904 0 42
ILMN_2696977 13.2638966003845 7692.828 2025.65351124117 0 48
ILMN_2740432 11.9721308872655 2940.895 1095.81662055017 0 34
ILMN_3126986 12.8929719977148 6276.185 1909.1442908169 0 38

Total number of rows: 25697

Table truncated, full table size 1650 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap