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Sample GSM872216 Query DataSets for GSM872216
Status Public on Mar 14, 2012
Title BMM_F2D_120_F
Sample type RNA
 
Source name Bone marrow derived macrophages from female DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: female
strain: DBA/2JxAKR/J
cell type: bone marrow derived macrophages (BMM)
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Bone marrow was flushed with DMEM and cells were grown for 10-14 days in Bone marrow macrophages complete media
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) hsuj@ccf.org
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 4.17351637655893 23.69712 6.15229723080474 0.6904762 38
ILMN_2956159 13.424341814088 7556.556 2235.69885093146 0 41
ILMN_2704576 4.78226853209978 27.88288 8.33038149744128 0.1253133 48
ILMN_3135931 13.4462459706025 7583.167 2100.55325316622 0 30
ILMN_2516699 13.7532623321719 9626.838 3134.42451962084 0 38
ILMN_2964873 14.1316861494688 11704.48 3978.28302600832 0 53
ILMN_1377920 13.7224347345669 9413.083 3055.23586178796 0 120
ILMN_2747959 8.01963344031049 155.2228 48.5756297845215 0 29
ILMN_2666018 4.7689621135908 27.75727 10.415524 0.1303258 49
ILMN_2851231 12.3486705320663 3602.24 1082.7453 0 49
ILMN_2948086 11.9908324150441 2521.424 760.798203416944 0 45
ILMN_2675747 12.4022755628588 3709.739 1160.054 0 49
ILMN_1258988 9.23899540356158 339.9493 108.412707514874 0 33
ILMN_2876066 13.9370770625561 10398.04 3342.46414818598 0 41
ILMN_2588052 14.0303542221077 11371.4 3542.24760932322 0 84
ILMN_2658908 4.35330677489892 24.75725 8.67627092765677 0.5 38
ILMN_2876071 13.8947964597709 10166.16 3775.14389062528 0 46
ILMN_2696977 12.819512360874 5132.024 1872.66360362773 0 37
ILMN_2740432 11.635971213573 1987.627 781.903957559188 0 42
ILMN_3126986 12.9082577234049 5438.043 1486.15431939738 0 46

Total number of rows: 25697

Table truncated, full table size 1645 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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