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Sample GSM872230 Query DataSets for GSM872230
Status Public on Mar 14, 2012
Title BMM_F2A_116_F
Sample type RNA
 
Source name Bone marrow derived macrophages from female DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: female
strain: DBA/2JxAKR/J
cell type: bone marrow derived macrophages (BMM)
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Bone marrow was flushed with DMEM and cells were grown for 10-14 days in Bone marrow macrophages complete media
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) hsuj@ccf.org
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 4.64295210919592 31.82331 10.224097918994 0.2255639 33
ILMN_2956159 13.3818472839267 6620.394 1216.11109212933 0 31
ILMN_2704576 4.38496198907357 29.66619 8.3279436918106 0.4586466 52
ILMN_3135931 13.4881878545018 7231.858 1724.76099880775 0 42
ILMN_2516699 13.8206889427679 9663.14 3015.49866455285 0 45
ILMN_2964873 13.8947964597709 10475.48 3003.68994793076 0 48
ILMN_1377920 13.7224347345669 9280.958 2633.6286096617 0 131
ILMN_2747959 7.98384017240871 152.24 42.8468841821666 0 28
ILMN_2666018 4.81468787018941 33.38778 11.7585651928214 0.1203008 42
ILMN_2851231 12.0733125908269 2528.955 663.104632046384 0 33
ILMN_2948086 12.0876633072044 2545.34 810.185957314295 0 53
ILMN_2675747 12.8354625648841 4292.754 1259.56400368084 0 52
ILMN_1258988 10.9709522808174 1146.719 320.676835675676 0 42
ILMN_2876066 14.3217164163927 14341.52 3431.52710465175 0 39
ILMN_2588052 13.9824632190025 11466.65 2983.88194595188 0 78
ILMN_2658908 4.71304386665495 32.43873 11.8412651556313 0.1666667 37
ILMN_2876071 14.1981373709814 14097.5 5416.33589477023 0 40
ILMN_2696977 13.3213665215877 6405.944 1447.91930994945 0 42
ILMN_2740432 12.1102947568089 2581.241 879.665184308354 0 57
ILMN_3126986 13.1257171971427 5518.132 1224.55597393488 0 40

Total number of rows: 25697

Table truncated, full table size 1646 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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