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Sample GSM872231 Query DataSets for GSM872231
Status Public on Mar 14, 2012
Title BMM_F2A_117_F
Sample type RNA
 
Source name Bone marrow derived macrophages from female DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: female
strain: DBA/2JxAKR/J
cell type: bone marrow derived macrophages (BMM)
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Bone marrow was flushed with DMEM and cells were grown for 10-14 days in Bone marrow macrophages complete media
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) hsuj@ccf.org
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 3.99657699233981 27.86734 8.69262151203744 0.8446115 44
ILMN_2956159 13.61103989448 8502.278 2161.1954 0 49
ILMN_2704576 4.10032872248106 28.63556 7.04369377372583 0.7756892 26
ILMN_3135931 13.4462459706025 7742.277 1727.48109974318 0 32
ILMN_2516699 13.7224347345669 8868.722 2354.21818007948 0 27
ILMN_2964873 13.9370770625561 10460.48 2918.14208901246 0 42
ILMN_1377920 13.7837814497459 9307.568 2465.77522291814 0 117
ILMN_2747959 7.149771687503 109.7768 54.1843141932648 0 32
ILMN_2666018 4.9512086389794 37.31035 15.790534919429 0.07017544 43
ILMN_2851231 12.0252412641338 2845.648 899.914289701525 0 41
ILMN_2948086 11.7147257990794 2320.035 475.628558634098 0 35
ILMN_2675747 12.7099232003398 4286.852 897.064635395455 0 38
ILMN_1258988 11.0088229786108 1368.674 385.90659126201 0 39
ILMN_2876066 14.4496762423788 15409.99 4703.90610333803 0 39
ILMN_2588052 14.1316861494688 12403.46 4285.2092294808 0 85
ILMN_2658908 3.89293589158649 27.14665 8.58984 0.8884712 36
ILMN_2876071 13.9824632190025 10600.35 2863.40640114778 0 42
ILMN_2696977 13.3213665215877 6526.215 1627.04050211274 0 42
ILMN_2740432 12.0803018102721 2944.484 1056.04731224217 0 48
ILMN_3126986 13.1257171971427 5838.254 1501.56457434336 0 34

Total number of rows: 25697

Table truncated, full table size 1646 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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