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Sample GSM872233 Query DataSets for GSM872233
Status Public on Mar 14, 2012
Title BMM_F2A_119_F
Sample type RNA
 
Source name Bone marrow derived macrophages from female DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: female
strain: DBA/2JxAKR/J
cell type: bone marrow derived macrophages (BMM)
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Bone marrow was flushed with DMEM and cells were grown for 10-14 days in Bone marrow macrophages complete media
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) hsuj@ccf.org
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 4.63896836752091 35.93918 14.8717986259503 0.1929825 44
ILMN_2956159 13.3602548714397 10873.64 1978.09016964035 0 33
ILMN_2704576 4.38648264854047 32.90827 10.89063 0.4498747 36
ILMN_3135931 13.4026755394071 11051.65 1729.58785617982 0 38
ILMN_2516699 13.7532623321719 14468.43 4005.16962407247 0 31
ILMN_2964873 14.0303542221077 18019.86 2907.13649515843 0 42
ILMN_1377920 13.8538136213455 15833.48 3564.29379851738 0 114
ILMN_2747959 5.84023839643546 67.67597 21.8150710716152 0 29
ILMN_2666018 4.26511323160604 31.69427 8.45832850359715 0.5902256 44
ILMN_2851231 13.1060822813177 9528.639 2677.84702321584 0 39
ILMN_2948086 12.7357941752873 6853.417 2046.40535699965 0 47
ILMN_2675747 12.6575805195319 6494.805 1836.32236961597 0 50
ILMN_1258988 11.0550695026177 2215.305 503.379771585157 0 50
ILMN_2876066 14.4496762423788 19681.49 4832.9568 0 49
ILMN_2588052 14.2617429273087 18653.52 5623.43637426433 0 80
ILMN_2658908 4.33884068078499 32.42076 10.4814586036847 0.5025063 29
ILMN_2876071 13.9370770625561 16414.96 5616.83161679454 0 52
ILMN_2696977 13.1807706602325 10060 1939.17055535826 0 46
ILMN_2740432 12.5442356768257 6135.601 2169.25815338573 0 42
ILMN_3126986 12.819512360874 7376.676 1651.87037904007 0 46

Total number of rows: 25697

Table truncated, full table size 1641 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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