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Sample GSM87379

Query DataSets for GSM87379

Status

Public on May 01, 2006

Title

Adult kidney rep 1 (430A)

Sample type

RNA

Source name

Adult kidney replicate 1

Organism

Mus musculus

Characteristics

Wild type, CD-1 strain, greater than 10 week old (Adult), whole kidney

Extracted molecule

total RNA

Extraction protocol

Both kidneys were removed from a sacrificed adult mouse, rinsed in PBS, total RNA was prepared using RNAzol (Tel-Test, Friendwood, TX, USA)

Label

biotin

Label protocol

100 ng of total RNA underwent two round of in vitro transcription according to Baugh LR, Hill AA, Brown EL, Hunter CP: Quantitative analysis of mRNA amplification by in vitro transcription. Nucleic Acids Res 29:E2938, 2001

Hybridization protocol

standard Affymetrix procedures

Scan protocol

standard Affymetrix procedures

Description

Wild type adult complete (whole) kidney replicate 1

Data processing

Affymetrix Microarray Suite version 5.0

Submission date

Dec 12, 2005

Last update date

Dec 12, 2005

Contact name

Kristopher Robert Schwab

E-mail(s)

kristopher.schwab@cchmc.org

Organization name

Cincinnati Children's Hospital Research Foundation

Department

Developmental Biology

Lab

S. Steven Potter

Street address

3333 Burnett Ave

City

Cincinnati

State/province

ZIP/Postal code

45229

Country

USA

Platform ID

GPL339

Series (1)

GSE3808

Complete embryonic metanephric kidney analysis of wild type and Hoxa11, Hoxd11 null targeted mice

Data table header descriptions
ID_REF
VALUE	MAS5-calculated Signal intensity
ABS_CALL	the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE	'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE
AFFX-BioB-5_at	657.6	P	0.00762
AFFX-BioB-M_at	873.4	P	0.000081
AFFX-BioB-3_at	425.9	P	0.004017
AFFX-BioC-5_at	1420.8	P	0.00011
AFFX-BioC-3_at	1016.4	P	0.00006
AFFX-BioDn-5_at	1497.8	P	0.00007
AFFX-BioDn-3_at	8876.3	P	0.000195
AFFX-CreX-5_at	10847.6	P	0.000044
AFFX-CreX-3_at	22088	P	0.000044
AFFX-DapX-5_at	29	A	0.425962
AFFX-DapX-M_at	34.6	A	0.382599
AFFX-DapX-3_at	16.4	A	0.876428
AFFX-LysX-5_at	3.9	A	0.921998
AFFX-LysX-M_at	14.6	A	0.852061
AFFX-LysX-3_at	6.8	A	0.834139
AFFX-PheX-5_at	10.4	A	0.904333
AFFX-PheX-M_at	9.7	A	0.852061
AFFX-PheX-3_at	102.1	A	0.425962
AFFX-ThrX-5_at	9.1	A	0.9273
AFFX-ThrX-M_at	14.7	A	0.574038

Total number of rows: 22690

Table truncated, full table size 628 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM87379.CEL.gz	3.4 Mb	(ftp)(http)	CEL
GSM87379.EXP.gz	497 b	(ftp)(http)	EXP