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Sample GSM87391 Query DataSets for GSM87391
Status Public on May 01, 2006
Title Wild type E16.5 kidney rep 1 (430A)
Sample type RNA
Source name Wild type E16.5 kidneys replicate 1
Organism Mus musculus
Characteristics Wild type embryonic kidney at E16.5, CD-1 strain, whole kidney
Extracted molecule total RNA
Extraction protocol Kidneys were cleanly dissected from an wild type CD-1 E16.5 embryo, rinsed in PBS, pooled, total RNA was prepared using the Stratagene Absolutely RNA Nanoprep Kit (La Jolla, CA)
Label biotin
Label protocol 30 ng of total RNA underwent two round of in vitro transcription according to Baugh LR, Hill AA, Brown EL, Hunter CP: Quantitative analysis of mRNA amplification by in vitro transcription. Nucleic Acids Res 29:E2938, 2001
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Wildtype complete (whole) E16.5 kidney replicate 1
Data processing Affymetrix Microarray Suite version 5.0
Submission date Dec 12, 2005
Last update date Dec 12, 2005
Contact name Kristopher Robert Schwab
Organization name Cincinnati Children's Hospital Research Foundation
Department Developmental Biology
Lab S. Steven Potter
Street address 3333 Burnett Ave
City Cincinnati
State/province OH
ZIP/Postal code 45229
Country USA
Platform ID GPL339
Series (1)
GSE3808 Complete embryonic metanephric kidney analysis of wild type and Hoxa11, Hoxd11 null targeted mice

Data table header descriptions
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 568 P 0.006187
AFFX-BioB-M_at 932.8 P 0.000052
AFFX-BioB-3_at 207.7 P 0.002556
AFFX-BioC-5_at 1132.6 P 0.00011
AFFX-BioC-3_at 817.3 P 0.00006
AFFX-BioDn-5_at 1140.2 P 0.000044
AFFX-BioDn-3_at 6424.4 P 0.000095
AFFX-CreX-5_at 11475.1 P 0.000044
AFFX-CreX-3_at 17413.7 P 0.000044
AFFX-DapX-5_at 77.2 A 0.108979
AFFX-DapX-M_at 69.6 A 0.116113
AFFX-DapX-3_at 57.6 A 0.58862
AFFX-LysX-5_at 30.1 A 0.470241
AFFX-LysX-M_at 13.4 A 0.760937
AFFX-LysX-3_at 78.3 A 0.123572
AFFX-PheX-5_at 7.9 A 0.9273
AFFX-PheX-M_at 5 A 0.897835
AFFX-PheX-3_at 30.9 A 0.617401
AFFX-ThrX-5_at 26.1 A 0.617401
AFFX-ThrX-M_at 16.2 A 0.58862

Total number of rows: 22690

Table truncated, full table size 630 Kbytes.

Supplementary file Size Download File type/resource
GSM87391.CEL.gz 3.5 Mb (ftp)(http) CEL
GSM87391.EXP.gz 502 b (ftp)(http) EXP
Raw data provided as supplementary file

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