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Sample GSM876862 Query DataSets for GSM876862
Status Public on Aug 01, 2012
Title A1_Frontal_Cortex_Control
Sample type RNA
 
Source name brain_frontal_cortex
Organism Homo sapiens
Characteristics race: White
age: 44
gender: male
phenotype: normal (control)
tissue: Frontal cortex
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
Scan protocol GeneChips were scanned using the GeneChip® Scanner 3000 7G.
Description 25G758.CEL
Gene expression data from the white matter of control human brain
Data processing The data were analyzed with Affy package for R programming.
 
Submission date Feb 16, 2012
Last update date Aug 01, 2012
Contact name Jessica Winkler
E-mail(s) jwinkle@unmc.edu
Organization name University of Nebraska Medical Center
Department Pharmacology and Experimental Neuroscience
Lab Howard Fox
Street address 985800 Nebraska Medical Center- DRC I
City Omaha
ZIP/Postal code 68198
Country USA
 
Platform ID GPL570
Series (1)
GSE35864 The National NeuroAIDS Tissue Consortium Brain Gene Array: Two types of HIV-associated neurocognitive impairment

Data table header descriptions
ID_REF
VALUE RMA signal intensity

Data table
ID_REF VALUE
1007_s_at 10.75054692
1053_at 7.202466572
117_at 6.617228829
121_at 9.585189096
1255_g_at 5.489696221
1294_at 6.894608759
1316_at 8.339061953
1320_at 5.896590666
1405_i_at 4.898360269
1431_at 6.080900668
1438_at 7.649114327
1487_at 8.681448567
1494_f_at 7.370609899
1552256_a_at 8.693866915
1552257_a_at 9.142386189
1552258_at 6.531028092
1552261_at 5.975443347
1552263_at 5.500061561
1552264_a_at 7.436864014
1552266_at 6.157735366

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM876862_25G758.CEL.gz 5.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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