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Sample GSM876889 Query DataSets for GSM876889
Status Public on Aug 01, 2012
Title A4_basal_ganglia_Control
Sample type RNA
 
Source name brain_basal_ganglia
Organism Homo sapiens
Characteristics race: White
age: 58
gender: male
phenotype: normal (control)
tissue: Basal ganglia
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
Scan protocol GeneChips were scanned using the GeneChip® Scanner 3000 7G.
Description 52G759.CEL
Gene expression data from the white matter of control human brain
Data processing The data were analyzed with Affy package for R programming.
 
Submission date Feb 16, 2012
Last update date Aug 01, 2012
Contact name Jessica Winkler
E-mail(s) jwinkle@unmc.edu
Organization name University of Nebraska Medical Center
Department Pharmacology and Experimental Neuroscience
Lab Howard Fox
Street address 985800 Nebraska Medical Center- DRC I
City Omaha
ZIP/Postal code 68198
Country USA
 
Platform ID GPL570
Series (1)
GSE35864 The National NeuroAIDS Tissue Consortium Brain Gene Array: Two types of HIV-associated neurocognitive impairment

Data table header descriptions
ID_REF
VALUE RMA signal intensity

Data table
ID_REF VALUE
1007_s_at 10.83985607
1053_at 6.172936343
117_at 9.356934752
121_at 10.01489839
1255_g_at 6.648832086
1294_at 7.373037698
1316_at 7.815047452
1320_at 6.347137099
1405_i_at 6.085521702
1431_at 5.223427297
1438_at 7.807196804
1487_at 8.473597108
1494_f_at 7.769274739
1552256_a_at 9.113134678
1552257_a_at 7.891954963
1552258_at 6.738124532
1552261_at 6.16844354
1552263_at 6.80017276
1552264_a_at 6.692310416
1552266_at 5.647203259

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM876889_52G759.CEL.gz 5.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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