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Sample GSM876898 Query DataSets for GSM876898
Status Public on Aug 01, 2012
Title C1_basal_ganglia_HIV infected_w/HAD_w/o HIVE
Sample type RNA
 
Source name brain_basal_ganglia
Organism Homo sapiens
Characteristics race: Black
age: 33
gender: male
phenotype: HIV Infected with HAD
tissue: Basal ganglia
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
Scan protocol GeneChips were scanned using the GeneChip® Scanner 3000 7G.
Description 61G759.CEL
Gene expression data from the white matter of HIV infected HAD human brain
Data processing The data were analyzed with Affy package for R programming.
 
Submission date Feb 16, 2012
Last update date Aug 01, 2012
Contact name Jessica Winkler
E-mail(s) jwinkle@unmc.edu
Organization name University of Nebraska Medical Center
Department Pharmacology and Experimental Neuroscience
Lab Howard Fox
Street address 985800 Nebraska Medical Center- DRC I
City Omaha
ZIP/Postal code 68198
Country USA
 
Platform ID GPL570
Series (1)
GSE35864 The National NeuroAIDS Tissue Consortium Brain Gene Array: Two types of HIV-associated neurocognitive impairment

Data table header descriptions
ID_REF
VALUE RMA signal intensity

Data table
ID_REF VALUE
1007_s_at 10.82971672
1053_at 6.650896663
117_at 7.498246622
121_at 9.337505046
1255_g_at 7.915993837
1294_at 8.130161903
1316_at 8.112234963
1320_at 5.568862017
1405_i_at 5.395705991
1431_at 5.249039389
1438_at 7.369249054
1487_at 8.544426687
1494_f_at 7.204931481
1552256_a_at 9.829167089
1552257_a_at 8.822291319
1552258_at 6.666282079
1552261_at 5.882630465
1552263_at 6.522965493
1552264_a_at 7.237012972
1552266_at 5.491891055

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM876898_61G759.CEL.gz 5.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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