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Sample GSM87836

Query DataSets for GSM87836

Status

Public on Dec 22, 2005

Title

Liver_WildType_4

Sample type

RNA

Source name

liver_wildtype

Organism

Mus musculus

Characteristics

Strain: Inbred C57BL/6J;
Gender: male;
Age: day of life 3;
Tissue: liver

Treatment protocol

Age-matched wildtype littermates of glycerol kinase knockout mice.

Extracted molecule

total RNA

Label

biotin

Description

GeneChip Operating Software (GCOS) 1.2 software (Affymetrix, Inc.) using default values (scaling, target signal intensity = 500; normalization, all probe sets; parameters, all set at default values) was used to generate the data.

Data processing

GCOS data analyzed with dChip.

Submission date

Dec 14, 2005

Last update date

Dec 16, 2005

Contact name

Nicole Kim MacLennan

E-mail(s)

nmaclennan@mednet.ucla.edu

Phone

310-206-3050

Organization name

University of California, Los Angeles

Department

Pediatrics

Lab

McCabe

Street address

10833 LeConte Ave

City

Los Angeles

State/province

ZIP/Postal code

90095

Country

USA

Platform ID

GPL1261

Series (1)

GSE3843

Targeted disruption of glycerol kinase gene in mice: expression analysis in liver

Data table header descriptions
ID_REF
VALUE	The "signal" calculated by GCOS software.
ABS_CALL	The "detection" call calculated by GCOS software.
DETECTION P-VALUE	The "detection p-value" calculated by GCOS software.

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE
AFFX-BioB-5_at	311.8	P	0.00141
AFFX-BioB-M_at	645.7	P	0.00141
AFFX-BioB-3_at	257.6	P	0.000127
AFFX-BioC-5_at	991.7	P	0.00011
AFFX-BioC-3_at	964.9	P	0.000195
AFFX-BioDn-5_at	1056.2	P	0.00007
AFFX-BioDn-3_at	5493.3	P	0.000169
AFFX-CreX-5_at	13838.5	P	0.000052
AFFX-CreX-3_at	17138.3	P	0.000044
AFFX-DapX-5_at	1049.9	P	0.000044
AFFX-DapX-M_at	1967	P	0.000754
AFFX-DapX-3_at	1734.8	P	0.000052
AFFX-LysX-5_at	116.7	P	0.000147
AFFX-LysX-M_at	310.5	A	0.116113
AFFX-LysX-3_at	332.4	P	0.000052
AFFX-PheX-5_at	203.7	P	0.000509
AFFX-PheX-M_at	204.8	P	0.002556
AFFX-PheX-3_at	325.4	P	0.003595
AFFX-ThrX-5_at	228.1	P	0.003212
AFFX-ThrX-M_at	348.2	P	0.000662

Total number of rows: 45101

Table truncated, full table size 1220 Kbytes.

Supplementary data files not provided