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Sample GSM87837

Query DataSets for GSM87837

Status

Public on Dec 22, 2005

Title

Liver_KnockOut_1

Sample type

RNA

Source name

liver_knockout

Organism

Mus musculus

Characteristics

Strain: Inbred C57BL/6J;
Gender: male;
Age: day of life 3;
Tissue: liver

Treatment protocol

Glycerol kinase knockout mice.

Extracted molecule

total RNA

Label

biotin

Description

GeneChip Operating Software (GCOS) 1.2 software (Affymetrix, Inc.) using default values (scaling, target signal intensity = 500; normalization, all probe sets; parameters, all set at default values) was used to generate the data.

Data processing

GCOS data analyzed with dChip.

Submission date

Dec 14, 2005

Last update date

Dec 16, 2005

Contact name

Nicole Kim MacLennan

E-mail(s)

nmaclennan@mednet.ucla.edu

Phone

310-206-3050

Organization name

University of California, Los Angeles

Department

Pediatrics

Lab

McCabe

Street address

10833 LeConte Ave

City

Los Angeles

State/province

ZIP/Postal code

90095

Country

USA

Platform ID

GPL1261

Series (1)

GSE3843

Targeted disruption of glycerol kinase gene in mice: expression analysis in liver

Data table header descriptions
ID_REF
VALUE	The "signal" calculated by GCOS software.
ABS_CALL	The "detection" call calculated by GCOS software.
DETECTION P-VALUE	The "detection p-value" calculated by GCOS software.

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE
AFFX-BioB-5_at	355	P	0.005565
AFFX-BioB-M_at	712.7	P	0.002023
AFFX-BioB-3_at	151.9	P	0.000857
AFFX-BioC-5_at	925.5	P	0.000081
AFFX-BioC-3_at	803.2	P	0.000662
AFFX-BioDn-5_at	1203.8	P	0.00006
AFFX-BioDn-3_at	6159.5	P	0.000081
AFFX-CreX-5_at	14494.6	P	0.000044
AFFX-CreX-3_at	17611.4	P	0.000044
AFFX-DapX-5_at	1884.4	P	0.00006
AFFX-DapX-M_at	3339.2	P	0.000258
AFFX-DapX-3_at	4521.7	P	0.000052
AFFX-LysX-5_at	284.5	P	0.00006
AFFX-LysX-M_at	534	P	0.00844
AFFX-LysX-3_at	870.9	P	0.00006
AFFX-PheX-5_at	323.2	P	0.000258
AFFX-PheX-M_at	457.7	P	0.000225
AFFX-PheX-3_at	646.7	P	0.001102
AFFX-ThrX-5_at	454.2	P	0.002023
AFFX-ThrX-M_at	639.6	P	0.000169

Total number of rows: 45101

Table truncated, full table size 1218 Kbytes.

Supplementary data files not provided