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Sample GSM87840

Query DataSets for GSM87840

Status

Public on Dec 22, 2005

Title

Liver_KnockOut_4

Sample type

RNA

Source name

liver_knockout

Organism

Mus musculus

Characteristics

Strain: Inbred C57BL/6J;
Gender: male;
Age: day of life 3;
Tissue: liver

Treatment protocol

Glycerol kinase knockout mice.

Extracted molecule

total RNA

Label

biotin

Description

GeneChip Operating Software (GCOS) 1.2 software (Affymetrix, Inc.) using default values (scaling, target signal intensity = 500; normalization, all probe sets; parameters, all set at default values) was used to generate the data.

Data processing

GCOS data analyzed with dChip.

Submission date

Dec 14, 2005

Last update date

Dec 16, 2005

Contact name

Nicole Kim MacLennan

E-mail(s)

nmaclennan@mednet.ucla.edu

Phone

310-206-3050

Organization name

University of California, Los Angeles

Department

Pediatrics

Lab

McCabe

Street address

10833 LeConte Ave

City

Los Angeles

State/province

ZIP/Postal code

90095

Country

USA

Platform ID

GPL1261

Series (1)

GSE3843

Targeted disruption of glycerol kinase gene in mice: expression analysis in liver

Data table header descriptions
ID_REF
VALUE	The "signal" calculated by GCOS software.
ABS_CALL	The "detection" call calculated by GCOS software.
DETECTION P-VALUE	The "detection p-value" calculated by GCOS software.

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE
AFFX-BioB-5_at	321.7	P	0.001248
AFFX-BioB-M_at	780	P	0.000225
AFFX-BioB-3_at	338.3	P	0.00006
AFFX-BioC-5_at	1023.5	P	0.000095
AFFX-BioC-3_at	969	P	0.00011
AFFX-BioDn-5_at	1313.6	P	0.00007
AFFX-BioDn-3_at	5351.1	P	0.000225
AFFX-CreX-5_at	15853.4	P	0.000052
AFFX-CreX-3_at	17916.4	P	0.000044
AFFX-DapX-5_at	1523.1	P	0.000044
AFFX-DapX-M_at	2277.3	P	0.000509
AFFX-DapX-3_at	2083.1	P	0.000052
AFFX-LysX-5_at	133.6	P	0.00011
AFFX-LysX-M_at	319	P	0.026111
AFFX-LysX-3_at	485.9	P	0.000044
AFFX-PheX-5_at	212	P	0.000972
AFFX-PheX-M_at	269.8	P	0.001102
AFFX-PheX-3_at	328.8	P	0.003595
AFFX-ThrX-5_at	267.8	P	0.002275
AFFX-ThrX-M_at	433.2	P	0.000509

Total number of rows: 45101

Table truncated, full table size 1220 Kbytes.

Supplementary data files not provided