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Sample GSM88346 Query DataSets for GSM88346
Status Public on Dec 19, 2006
Title p38-1
Sample type RNA
 
Source name p38-injected rat left ventricle
Organism Rattus norvegicus
Characteristics Strain:Sprague-Dawley rats Gender:male Weight: 250-300 g Tissue:left ventricle
Extracted molecule total RNA
Label Biotin
 
Hybridization protocol Wash A1 Recovery Mixes: 0
Wash A1 Temperature (C): 30
Number of Wash A1 Cycles: 10
Mixes per Wash A1 Cycle: 2
Wash B Recovery Mixes: 0
Wash B Temperature (C): 50
Number of Wash B Cycles: 6
Mixes per Wash B Cycle: 15
Stain Temperature (C): 35
First Stain Time (seconds): 300
Wash A2 Recovery Mixes: 0
Wash A2 Temperature (C): 30
Number of Wash A2 Cycles: 10
Mixes per Wash A2 Cycle: 4
Second Stain Time (seconds): 300
Third Stain Time (seconds): 300
Wash A3 Recovery Mixes: 0
Description Gene expression profiles three days after MKK3bE + WT p38α gene transfer were compared with those of Lac Z –treated animals by screening Affymetrix Rat Expression Set 230_2.0 Arrays (there are 5 samples in both group).
Data processing GCOS 1.2
 
Submission date Dec 19, 2005
Last update date Dec 30, 2005
Contact name Jaana Rysä
E-mail(s) jaana.rysa@oulu.fi
Phone +358-8-5375262
Organization name University of Oulu
Department Pharmacology and toxicology
Street address PO BOX 5000
City University of OULU
ZIP/Postal code 90014
Country Finland
 
Platform ID GPL1355
Series (1)
GSE3866 p38 MAPK overexpression in heart in vivo.

Data table header descriptions
ID_REF
VALUE "Signal" as a measure of the abundance of a transcript
ABS_CALL The call in an absolute analysis that indicates if the transcript was present (P), absent (A) or marginal (M).

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 98.1 P
AFFX-BioB-M_at 159.3 P
AFFX-BioB-3_at 72.4 P
AFFX-BioC-5_at 340.8 P
AFFX-BioC-3_at 301.6 P
AFFX-BioDn-5_at 745.5 P
AFFX-BioDn-3_at 1785.2 P
AFFX-CreX-5_at 4153.3 P
AFFX-CreX-3_at 5365.7 P
AFFX-DapX-5_at 1016.3 P
AFFX-DapX-M_at 2031.4 P
AFFX-DapX-3_at 3193.6 P
AFFX-LysX-5_at 138.7 P
AFFX-LysX-M_at 248.7 P
AFFX-LysX-3_at 554.6 P
AFFX-PheX-5_at 220.0 P
AFFX-PheX-M_at 343.7 P
AFFX-PheX-3_at 346.4 P
AFFX-ThrX-5_at 243.2 P
AFFX-ThrX-M_at 424.8 P

Total number of rows: 31099

Table truncated, full table size 559 Kbytes.




Supplementary file Size Download File type/resource
GSM88346.CEL.gz 4.3 Mb (ftp)(http) CEL
GSM88346.EXP.gz 331 b (ftp)(http) EXP

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