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Sample GSM886610 Query DataSets for GSM886610
Status Public on Feb 17, 2014
Title KL1_muscle_control
Sample type RNA
 
Source name Muscle_control
Organism Homo sapiens
Characteristics tissue source: matched healthy control
tissue: Vastus lateralis muscle
tissue state: basal state
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from muscle biopsies using the TRIzol protocol including an extra phenol-chloroform step
Label Biotin
Label protocol total RNA was converted to amplified RNA (aRNA) and fragmented using the MessageAmpTM III RNA amplification kit
 
Hybridization protocol Fragmented aRNA was hybridized to Affymetrix HG-U133A 2.0 chips
Scan protocol standard Affymetrix protocol
Data processing Data were analyzed in R and analyzed using variance stabilizing normalization and model based index calculation (MBEI)
 
Submission date Mar 06, 2012
Last update date Feb 18, 2014
Contact name Vibe Skov
E-mail(s) vihs@regionsjaelland.dk
Phone +4526178735
Organization name Roskilde Hospital
Department Hematology
Street address Koegevej 7-13
City Roskilde
ZIP/Postal code 4000
Country Denmark
 
Platform ID GPL571
Series (1)
GSE36297 A PGC-1alpha-dependent decrease in mitochondrial oxidative metabolism in muscle of humans with inherited insulin resistance

Data table header descriptions
ID_REF
VALUE Normalized

Data table
ID_REF VALUE
1007_s_at 979.2121165
1053_at 273.6925868
117_at 211.4291985
121_at 792.5717726
1255_g_at 125.2671084
1294_at 271.5629609
1316_at 1061.572636
1320_at 157.8500476
1405_i_at 150.6071254
1431_at 223.4285099
1438_at 327.5412327
1487_at 1266.689479
1494_f_at 318.2039717
1598_g_at 1030.84458
160020_at 241.8106425
1729_at 354.9036462
177_at 178.8642309
1773_at 208.5939145
179_at 2477.151755
1861_at 148.4249128

Total number of rows: 22277

Table truncated, full table size 496 Kbytes.




Supplementary file Size Download File type/resource
GSM886610_KL1.CEL.gz 1.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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