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Sample GSM886619 Query DataSets for GSM886619
Status Public on Feb 17, 2014
Title Mic34_muscle_control
Sample type RNA
 
Source name Muscle_control
Organism Homo sapiens
Characteristics tissue source: matched healthy control
tissue: Vastus lateralis muscle
tissue state: basal state
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from muscle biopsies using the TRIzol protocol including an extra phenol-chloroform step
Label Biotin
Label protocol total RNA was converted to amplified RNA (aRNA) and fragmented using the MessageAmpTM III RNA amplification kit
 
Hybridization protocol Fragmented aRNA was hybridized to Affymetrix HG-U133A 2.0 chips
Scan protocol standard Affymetrix protocol
Data processing Data were analyzed in R and analyzed using variance stabilizing normalization and model based index calculation (MBEI)
 
Submission date Mar 06, 2012
Last update date Feb 18, 2014
Contact name Vibe Skov
E-mail(s) vihs@regionsjaelland.dk
Phone +4526178735
Organization name Roskilde Hospital
Department Hematology
Street address Koegevej 7-13
City Roskilde
ZIP/Postal code 4000
Country Denmark
 
Platform ID GPL571
Series (1)
GSE36297 A PGC-1alpha-dependent decrease in mitochondrial oxidative metabolism in muscle of humans with inherited insulin resistance

Data table header descriptions
ID_REF
VALUE Normalized

Data table
ID_REF VALUE
1007_s_at 1060.869642
1053_at 319.5781854
117_at 192.7177952
121_at 580.6563011
1255_g_at 131.5674568
1294_at 227.3319011
1316_at 876.2120367
1320_at 138.6167735
1405_i_at 166.8235899
1431_at 154.588786
1438_at 186.188567
1487_at 1191.341945
1494_f_at 276.2764268
1598_g_at 1046.794606
160020_at 224.9639439
1729_at 334.2367853
177_at 156.9936878
1773_at 199.5064345
179_at 2215.059379
1861_at 192.1507789

Total number of rows: 22277

Table truncated, full table size 496 Kbytes.




Supplementary file Size Download File type/resource
GSM886619_Mic34.CEL.gz 1.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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