NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM8867 Query DataSets for GSM8867
Status Public on Aug 06, 2003
Title SAGE_Hiroshima_GC_W226T
Sample type SAGE
Anchor NlaIII
Tag Count 43908
Tag Length 10
 
Source name primary gastric cancer tissue
Organism Homo sapiens
Extracted molecule total RNA
 
Description Tissue Description: 59 yrs male. Primary gastric adenocarcinoma, T1N0M0, stage IA (TNM classification of malignant tumors, 5th ed. New York: Wiley-Liss, Inc, 59-62.), well differentiated, obtained by surgery. Library constructed in the laboratory of Wataru Yasui, M. D., Ph. D. and Naohide Oue, M. D., Ph. D. (Department of Molecular Pathology, Hiroshima University Graduate School of Biomedical Sciences, Hiroshima, Japan).
Sex: male
Organ: stomach
Lab host: DH10B
Vector: pZErO-1
Vector type: plasmid
R. Site 1: Sph1
R. Site 2: Sph1
Library treatment: non-normalized
Tissue supplier: Kazuhiro Yoshida, M.D., Ph.D
Sample type: Bulk
Producer: Department of Molecular Pathology
Sequences generated to date: 2592
Keywords = stomach, early gastric cancer, non-normalized, SAGE library method, bulk
 
Submission date Aug 06, 2003
Last update date May 27, 2005
Contact name Wataru Yasui
E-mail(s) wyasui@hiroshima-u.ac.jp
Phone +81-82-257-5145
Fax +81-82-257-5149
Organization name Hiroshima University Graduate School of Biomedical Sciences
Department Molecular Pathology
Street address
City Hiroshima
ZIP/Postal code 734-8551
Country Japan
 
Platform ID GPL4
Series (1)
GSE545 SAGE Hiroshima gastric cancer tissue

Data table header descriptions
TAG Ten base SAGE tag
COUNT Absolute tag count
TPM Tags per million

Data table
TAG COUNT TPM
ATGTAAAAAA 706 16079.07443
CCCATCGTCC 705 16056.29954
TTCATACACC 388 8836.658468
AAAACATTCT 387 8813.883575
AGCCCTACAA 379 8631.684431
CACCTAATTG 370 8426.710394
AAAAAAAAAA 275 6263.095563
CCCGTCCGGA 258 5875.922383
GTTGTGGTTA 253 5762.047918
ATAATTCTTT 224 5101.576023
GGGCTGGGGT 212 4828.277307
TTGGTCCTCT 201 4577.753485
AATTAAATTA 200 4554.978592
ATTTGAGAAG 190 4327.229662
TAGGTTGTCT 189 4304.454769
CTAAGACTTC 186 4236.13009
CTGGGTTAAT 186 4236.13009
CTCCCCCAAA 180 4099.480732
TGATTTCACT 172 3917.281589
TGTGTTGAGA 165 3757.857338

Total number of rows: 16082

Table truncated, full table size 393 Kbytes.




Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap