NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM89148 Query DataSets for GSM89148
Status Public on Mar 15, 2006
Title Liver_Rep1_Agilent
Sample type RNA
 
Channel 1
Source name Liver_Rep1_Agilent with Cy5
Organism Homo sapiens
Characteristics Human tissue
Extracted molecule total RNA
Label Cy5
Label protocol Amplified and labeled according to standard Agilent protocols
 
Channel 2
Source name Universal Human Reference (Stratagene) with Cy3
Organism Homo sapiens
Characteristics Common Reference RNA sample
Extracted molecule total RNA
Label Cy3
Label protocol Amplified and labeled according to standard Agilent protocols
 
 
Hybridization protocol cRNA hybridized according to standard Agilent protocols
Scan protocol arrays were scanned according to standard Agilent protocols
Description Liver tissue
Universal Human Reference RNA sample (Stratagene)
Data processing Data processed with FeatureExtraction v7.5.1
 
Submission date Dec 23, 2005
Last update date Feb 09, 2006
Contact name Yulei Wang
E-mail(s) wangyy@appliedbiosystems.com
Organization name Applied Biosystems
Street address 850 Lincoln Centre Dr
City Foster City
State/province CA
ZIP/Postal code 94404
Country USA
 
Platform ID GPL1708
Series (1)
GSE4214 Gene expression profiling of the four human tissues by two microarray platforms and TaqMan real-time PCR

Data table header descriptions
ID_REF refers to ID column in the platform table
VALUE Log10 Ratio of normalized Cy5 (red) signal to normalized Cy3 (green) signal (intra array by loess, inter array to same median intensity of 1000)
gProcessedSignal normalized and background subtracted Cy3 (green) signal
rProcessedSignal normalized and background subtracted Cy5 (red) signal
gMeanSignal raw Cy3 (green) signal intensity
rMeanSignal raw Cy5 (red) signal intensity

Data table
ID_REF VALUE gProcessedSignal rProcessedSignal gMeanSignal rMeanSignal
15244 -0.092099787 285.06 230.5879 458.3438 434.3125
17001 0.249112138 48.77724 86.56242 427.7742 417.3548
34613 -0.110086387 650.483 504.8351 496.0357 464.75
18208 -0.228794556 368.7069 217.7141 468.6071 431.2857
7286 0.22734751 1586.733 2678.252 599.6071 703.7143
5724 -0.085692676 176.9179 145.2376 448.96 423.16
4447 0.505590974 40.15138 128.615 432.2143 422.5357
33303 -0.072799412 298.6362 252.5475 458.2857 434.1786
43100 -0.555915558 449.3127 124.9203 474.52 418.84
37011 0.434979233 30.36897 82.68167 421.8889 415.4074
10276 0.254041476 959.329 1721.905 531.3704 600.4815
42076 -0.081794573 201.9546 167.2858 447.24 424.24
4217 0.190373886 104.5294 162.0362 440.2258 424.3548
7814 0.086392673 178.035 217.2191 446.8387 429.4194
39609 -0.09443541 273.9946 220.4482 453.2222 429.0741
8223 -0.066691682 1607.885 1378.997 601.1 559.8
13497 0.424088254 2806.344 7451.251 736.3448 1221.966
18134 -0.079315267 382.1792 318.3844 467.3448 442.1724
42657 -0.315657257 150.644 72.82735 438.6897 409.1034
17766 0.386841177 30427.55 74149.49 3678.156 8776.531

Total number of rows: 40492

Table truncated, full table size 2063 Kbytes.




Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap