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Sample GSM89149 Query DataSets for GSM89149
Status Public on Mar 15, 2006
Title Liver_Rep2_Agilent
Sample type RNA
 
Channel 1
Source name Liver_Rep2_Agilent with Cy5
Organism Homo sapiens
Characteristics Human tissue
Extracted molecule total RNA
Label Cy5
Label protocol Amplified and labeled according to standard Agilent protocols
 
Channel 2
Source name Universal Human Reference (Stratagene) with Cy3
Organism Homo sapiens
Characteristics Common Reference RNA sample
Extracted molecule total RNA
Label Cy3
Label protocol Amplified and labeled according to standard Agilent protocols
 
 
Hybridization protocol cRNA hybridized according to standard Agilent protocols
Scan protocol arrays were scanned according to standard Agilent protocols
Description Liver tissue
Universal Human Reference RNA sample (Stratagene)
Data processing Data processed with FeatureExtraction v7.5.1
 
Submission date Dec 23, 2005
Last update date Feb 09, 2006
Contact name Yulei Wang
E-mail(s) wangyy@appliedbiosystems.com
Organization name Applied Biosystems
Street address 850 Lincoln Centre Dr
City Foster City
State/province CA
ZIP/Postal code 94404
Country USA
 
Platform ID GPL1708
Series (1)
GSE4214 Gene expression profiling of the four human tissues by two microarray platforms and TaqMan real-time PCR

Data table header descriptions
ID_REF refers to ID column in the platform table
VALUE Log10 Ratio of normalized Cy5 (red) signal to normalized Cy3 (green) signal (intra array by loess, inter array to same median intensity of 1000)
gProcessedSignal normalized and background subtracted Cy3 (green) signal
rProcessedSignal normalized and background subtracted Cy5 (red) signal
gMeanSignal raw Cy3 (green) signal intensity
rMeanSignal raw Cy5 (red) signal intensity

Data table
ID_REF VALUE gProcessedSignal rProcessedSignal gMeanSignal rMeanSignal
15244 -0.187580475 464.4963 301.5795 475.1935 447.5161
17001 0 50.62519 82.00311 429.7931 418.3793
34613 0.007332375 470.6823 478.6965 466.0714 465.3214
18208 -0.201546844 811.6331 510.2851 511.5862 469.7241
7286 0.233921416 1600.862 2743.312 609.129 728.0645
5724 0.081170328 123.9495 149.4222 441.9643 430.8929
4447 0.381091068 39.37371 94.68853 428.9231 425.8077
33303 0.014054754 228.3259 235.8359 444.0714 434.3571
43100 -0.708985382 474.6937 92.77438 480.6563 419.125
37011 0 57.06605 41.96042 422.7931 415.2069
10276 0.198551738 837.1015 1322.3 516.5 565.2857
42076 0.030675829 205.8836 220.9518 447.5484 432.0645
4217 0.594754195 60.57886 238.2733 434.3846 439.4231
7814 0.159531147 183.4552 264.8873 450.2857 440.8214
39609 -0.021996399 283.1546 269.1703 457.3462 437.3462
8223 -0.080304405 1768.523 1469.963 621.25 578.0357
13497 0.421475823 2695.205 7113.243 718.75 1212.571
18134 -0.116224806 499.6351 382.321 483.4138 454.8276
42657 -0.279332685 175.3362 92.15926 446.5 418.7308
17766 0.459936434 27066.14 78048.17 3489 8956.033

Total number of rows: 40492

Table truncated, full table size 2063 Kbytes.




Supplementary data files not provided

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