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Sample GSM89152 Query DataSets for GSM89152
Status Public on Mar 15, 2006
Title Lung_Rep1_Agilent
Sample type RNA
 
Channel 1
Source name Lung_Rep1_Agilent with Cy5
Organism Homo sapiens
Characteristics Human tissue
Extracted molecule total RNA
Label Cy5
Label protocol Amplified and labeled according to standard Agilent protocols
 
Channel 2
Source name Universal Human Reference (Stratagene) with Cy3
Organism Homo sapiens
Characteristics Common Reference RNA sample
Extracted molecule total RNA
Label Cy3
Label protocol Amplified and labeled according to standard Agilent protocols
 
 
Hybridization protocol cRNA hybridized according to standard Agilent protocols
Scan protocol arrays were scanned according to standard Agilent protocols
Description Lung tissue
Universal Human Reference RNA sample (Stratagene)
Data processing Data processed with FeatureExtraction v7.5.1
 
Submission date Dec 23, 2005
Last update date Feb 09, 2006
Contact name Yulei Wang
E-mail(s) wangyy@appliedbiosystems.com
Organization name Applied Biosystems
Street address 850 Lincoln Centre Dr
City Foster City
State/province CA
ZIP/Postal code 94404
Country USA
 
Platform ID GPL1708
Series (1)
GSE4214 Gene expression profiling of the four human tissues by two microarray platforms and TaqMan real-time PCR

Data table header descriptions
ID_REF refers to ID column in the platform table
VALUE Log10 Ratio of normalized Cy5 (red) signal to normalized Cy3 (green) signal (intra array by loess, inter array to same median intensity of 1000)
gProcessedSignal normalized and background subtracted Cy3 (green) signal
rProcessedSignal normalized and background subtracted Cy5 (red) signal
gMeanSignal raw Cy3 (green) signal intensity
rMeanSignal raw Cy5 (red) signal intensity

Data table
ID_REF VALUE gProcessedSignal rProcessedSignal gMeanSignal rMeanSignal
15244 0.120013544 427.0771 563.0148 467.5667 498.1
17001 0 35.16634 67.36639 412.75 411.3929
34613 0.058732032 886.7014 1015.101 507.1481 570
18208 -0.201279051 318.2393 200.2049 457.25 437.8929
7286 0.027739768 1499.284 1598.172 569.2174 668.9565
5724 0.077058304 147.3259 175.929 440 434.2188
4447 0.439032914 66.6811 183.2465 432.2593 433.2963
33303 -0.014862357 295.1715 285.2411 454.6552 451.5517
43100 -0.657195727 286.2975 63.04081 454.7931 411.7586
37011 0.363202155 36.91597 85.19545 417 417.3103
10276 0.244475661 915.8894 1608.121 514.48 668.68
42076 -0.11902351 236.8167 180.0482 449.1852 433.0741
4217 0.185924095 115.6043 177.3774 437.2143 433.25
7814 -0.013130622 241.2172 234.0333 443.4138 441.4483
39609 -0.019623744 224.0022 214.1058 441.7857 436.7857
8223 0.014202802 1936.076 2000.438 600.6897 731.6897
13497 0.146476769 3098.119 4340.851 718.7778 1118.333
18134 -0.121098587 372.9116 282.1677 456.1429 449.9643
42657 -0.146667173 151.5577 108.1212 438.3667 421.8667
17766 0.206313427 59573.3 95799.9 5718.828 17092.79

Total number of rows: 40492

Table truncated, full table size 2069 Kbytes.




Supplementary data files not provided

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