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Sample GSM89498 Query DataSets for GSM89498
Status Public on Jan 31, 2006
Title C57BL/6 second hybridization_MG-U74Cv2
Sample type RNA
 
Source name thymocytes
Organism Mus musculus
Characteristics Wild type thymocytes
Extracted molecule total RNA
Label biotin
Label protocol 5 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Total adult thymocytes from C57BL/6 mouse
Data processing Affymetrix Microarray Suite version 4
 
Submission date Dec 27, 2005
Last update date Dec 27, 2005
Contact name Tsutomu Ohta
E-mail(s) cota@gan2.res.ncc.go.jp
Phone +81-3-3542-2511(ext. 3142)
Fax +81-3-3248-1631
URL http://www.ncc.go.jp/index.html
Organization name National Cancer Center Research Institute
Department Medical Genomics Center
Street address 5-1-1 Tsukiji
City Chuo-ku
State/province Tokyo
ZIP/Postal code 104-0045
Country Japan
 
Platform ID GPL83
Series (1)
GSE3909 Oligonucleotide microarray analysis of H-2b AND-TCR-transgenic thymocytes and C57BL/6 thymocytes

Data table header descriptions
ID_REF
VALUE MAS4-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
ID_REF VALUE ABS_CALL
AFFX-MurIL2_at 837.5 A
AFFX-MurIL10_at 1379.5 A
AFFX-MurIL4_at 95.5 A
AFFX-MurFAS_at 9598.5 P
AFFX-BioB-5_at 20282.4 P
AFFX-BioB-M_at 39270 P
AFFX-BioB-3_at 26193.6 P
AFFX-BioC-5_at 26104.3 P
AFFX-BioC-3_at 30857.2 P
AFFX-BioDn-5_at 23845.8 P
AFFX-BioDn-3_at 85466.3 P
AFFX-CreX-5_at 276622.1 P
AFFX-CreX-3_at 302431.8 P
AFFX-BioB-5_st 1779.8 A
AFFX-BioB-M_st 1383 A
AFFX-BioB-3_st 1844.4 A
AFFX-BioC-5_st -605.1 A
AFFX-BioC-3_st 685.8 A
AFFX-BioDn-5_st 6866.9 A
AFFX-BioDn-3_st 3763.8 P

Total number of rows: 11934

Table truncated, full table size 224 Kbytes.




Supplementary file Size Download File type/resource
GSM89498.CEL.gz 2.7 Mb (ftp)(http) CEL
GSM89498.EXP.gz 415 b (ftp)(http) EXP

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