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Sample GSM900183 Query DataSets for GSM900183
Status Public on Apr 02, 2012
Title CSHL_RnaSeq_Ovary_adult-8wks (superseded by GSE90190)
Sample type SRA
 
Source name Ovary
Organism Mus musculus
Characteristics lab: CSHL-m
lab description: Gingeras - Cold Spring Harbor Laboratory
datatype: RnaSeq
datatype description: Sequencing analysis of RNA expression
cell: Ovary
cell organism: mouse
cell description: Ovary
cell sex: U
age: adult-8wks
age description: Adult 8 weeks
age: adult-8wks
age description: Adult 8 weeks
biorep: 11AWC
labexpid: LID20821
readtype: 2x76D
readtype description: Paired 76 nt directed reads
replicate: 1
spikeinpool: Nist14
strain: C57BL/6J
strain description: C57 black 6, the most common inbred strain of laboratory mouse
Biomaterial provider CSHL lab
Growth protocol Ovary_Gingeras_protocol.pdf
Extracted molecule polyA RNA
Extraction protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeCshlLongRnaSeq
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina Genome Analyzer II
 
Description ****************************
GSM900183 record metadata submitted on Mar 23 2012 may be obsolete, up to date experimental metadata was resubmitted by ENCODE DCC and is available at GSE90190
****************************
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeCshlLongRnaSeq
 
Submission date Mar 23, 2012
Last update date Feb 26, 2020
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9250
Series (3)
GSE36025 Long RNA-seq from ENCODE/Cold Spring Harbor Lab
GSE49417 The conserved organization of the human and mouse transcriptomes
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
Relations
Reanalyzed by GSE80797
Superseded by GSE90190
Reanalyzed by GSE145930
SRA SRX135150
BioSample SAMN00849374
Named Annotation GSM900183_mm9_wgEncodeCshlLongRnaSeqOvaryAdult8wksMinusRawRep1.bigWig
Named Annotation GSM900183_mm9_wgEncodeCshlLongRnaSeqOvaryAdult8wksMinusRawRep2.bigWig
Named Annotation GSM900183_mm9_wgEncodeCshlLongRnaSeqOvaryAdult8wksPlusRawRep1.bigWig
Named Annotation GSM900183_mm9_wgEncodeCshlLongRnaSeqOvaryAdult8wksPlusRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM900183_mm9_wgEncodeCshlLongRnaSeqOvaryAdult8wksContigs.bedRnaElements.gz 10.6 Mb (ftp)(http) BEDRNAELEMENTS
GSM900183_mm9_wgEncodeCshlLongRnaSeqOvaryAdult8wksJunctions.bedRnaElements.gz 6.1 Mb (ftp)(http) BEDRNAELEMENTS
GSM900183_mm9_wgEncodeCshlLongRnaSeqOvaryAdult8wksMinusRawRep1.bigWig 103.7 Mb (ftp)(http) BIGWIG
GSM900183_mm9_wgEncodeCshlLongRnaSeqOvaryAdult8wksMinusRawRep2.bigWig 97.5 Mb (ftp)(http) BIGWIG
GSM900183_mm9_wgEncodeCshlLongRnaSeqOvaryAdult8wksPlusRawRep1.bigWig 104.6 Mb (ftp)(http) BIGWIG
GSM900183_mm9_wgEncodeCshlLongRnaSeqOvaryAdult8wksPlusRawRep2.bigWig 98.1 Mb (ftp)(http) BIGWIG
GSM900183_mm9_wgEncodeCshlLongRnaSeqOvaryAdult8wksSpikeinsRep1V2.bam 29.9 Mb (ftp)(http) BAM
GSM900183_mm9_wgEncodeCshlLongRnaSeqOvaryAdult8wksSpikeinsRep2V2.bam 34.7 Mb (ftp)(http) BAM
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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