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Sample GSM900192

Query DataSets for GSM900192

Status

Public on Apr 02, 2012

Title

CSHL_RnaSeq_Thymus_adult-8wks (superseded by GSE90183)

Sample type

SRA

Source name

Thymus

Organism

Mus musculus

Characteristics

lab: CSHL-m
lab description: Gingeras - Cold Spring Harbor Laboratory
datatype: RnaSeq
datatype description: Sequencing analysis of RNA expression
cell: Thymus
cell organism: mouse
cell description: Thymus
cell sex: U
age: adult-8wks
age description: Adult 8 weeks
age: adult-8wks
age description: Adult 8 weeks
biorep: 19AWC
labexpid: LID20922
readtype: 2x76D
readtype description: Paired 76 nt directed reads
replicate: 1
spikeinpool: Nist14
strain: C57BL/6J
strain description: C57 black 6, the most common inbred strain of laboratory mouse

Biomaterial provider

LICR lab

Extracted molecule

polyA RNA

Extraction protocol

http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeCshlLongRnaSeq

Library strategy

RNA-Seq

Library source

transcriptomic

Library selection

cDNA

Instrument model

Illumina Genome Analyzer II

Description

****************************
GSM900192 record metadata submitted on Mar 23 2012 may be obsolete, up to date experimental metadata was resubmitted by ENCODE DCC and is available at GSE90183
****************************

Data processing

http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeCshlLongRnaSeq

Submission date

Mar 23, 2012

Last update date

Feb 26, 2020

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL9250

Series (3)

GSE36025	Long RNA-seq from ENCODE/Cold Spring Harbor Lab
GSE49417	The conserved organization of the human and mouse transcriptomes
GSE49847	A comparative encyclopedia of DNA elements in the mouse genome

Relations

Reanalyzed by

Superseded by

Reanalyzed by

SRA

BioSample

Named Annotation

GSM900192_mm9_wgEncodeCshlLongRnaSeqThymusAdult8wksMinusRawRep1.bigWig

Named Annotation

GSM900192_mm9_wgEncodeCshlLongRnaSeqThymusAdult8wksMinusRawRep2.bigWig

Named Annotation

GSM900192_mm9_wgEncodeCshlLongRnaSeqThymusAdult8wksPlusRawRep1.bigWig

Named Annotation

GSM900192_mm9_wgEncodeCshlLongRnaSeqThymusAdult8wksPlusRawRep2.bigWig

Supplementary file	Size	Download	File type/resource
GSM900192_mm9_wgEncodeCshlLongRnaSeqThymusAdult8wksContigs.bedRnaElements.gz	12.3 Mb	(ftp)(http)	BEDRNAELEMENTS
GSM900192_mm9_wgEncodeCshlLongRnaSeqThymusAdult8wksJunctions.bedRnaElements.gz	7.4 Mb	(ftp)(http)	BEDRNAELEMENTS
GSM900192_mm9_wgEncodeCshlLongRnaSeqThymusAdult8wksMinusRawRep1.bigWig	131.0 Mb	(ftp)(http)	BIGWIG
GSM900192_mm9_wgEncodeCshlLongRnaSeqThymusAdult8wksMinusRawRep2.bigWig	162.2 Mb	(ftp)(http)	BIGWIG
GSM900192_mm9_wgEncodeCshlLongRnaSeqThymusAdult8wksPlusRawRep1.bigWig	133.7 Mb	(ftp)(http)	BIGWIG
GSM900192_mm9_wgEncodeCshlLongRnaSeqThymusAdult8wksPlusRawRep2.bigWig	165.7 Mb	(ftp)(http)	BIGWIG
GSM900192_mm9_wgEncodeCshlLongRnaSeqThymusAdult8wksSpikeinsRep1V2.bam	75.7 Mb	(ftp)(http)	BAM
GSM900192_mm9_wgEncodeCshlLongRnaSeqThymusAdult8wksSpikeinsRep2V2.bam	97.2 Mb	(ftp)(http)	BAM
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file