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Sample GSM901272 Query DataSets for GSM901272
Status Public on Jun 21, 2012
Title hetDKO1
Sample type RNA
Source name hetDKO_embryonic heart
Organism Mus musculus
Characteristics strain background: C57/BL6;129Ola mixed
genotype/variation: MesP1-cre:RBPJlox/+//Axin2-/- (hetDKO)
age: 22-24somites
developmental stage: E9.25
tissue: embryonic heart
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion Illumina TotalPrep RNA Amplif Kit
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 5388876035_e
Data processing The data have been normalized using the BeadStudio Gene Expression Module v3.3.7, and quantile normalization without background correction. Not or low expressed transcripts have been removed by a minimum Illumina detection p-value < 0.05. The data filtering resulted in 14,788 of 25,697 probes.
Submission date Mar 26, 2012
Last update date Jun 21, 2012
Contact name Alexandra Klaus
Phone +49 30 9406 3791
Fax +49 30 9406 2656
Organization name MDC (Max Delbrück Center)
Department Signal Transduction, Invasion and Metastasis of Epithelial Cells
Lab Prof.Walter Birchmeier
Street address Robert-Roessle-Str.10
City Berlin
State/province Berlin
ZIP/Postal code 13125
Country Germany
Platform ID GPL6885
Series (1)
GSE36804 Expression analysis of genes regulated by RBPJ (Notch) and Axin2 (Wnt) mediated signaling in mouse cardiogenesis at E9.25

Data table header descriptions
VALUE quantile normalized (without background correction)

Data table
ILMN_1212607 202.802
ILMN_1212612 175.6372
ILMN_1212632 309.6875
ILMN_1212636 14862.35
ILMN_1212637 2295.767
ILMN_1212645 317.62
ILMN_1212648 528.5742
ILMN_1212653 363.8817
ILMN_1212672 1354.878
ILMN_1212682 187.0953
ILMN_1212692 460.9568
ILMN_1212693 506.0715
ILMN_1212702 64851.5
ILMN_1212703 254.8517
ILMN_1212717 410.6733
ILMN_1212720 969.2849
ILMN_1212759 810.6547
ILMN_1212791 269.5327
ILMN_1212794 228.1237
ILMN_1212823 227.2064

Total number of rows: 14788

Table truncated, full table size 316 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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