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Sample GSM901276 Query DataSets for GSM901276
Status Public on Jun 21, 2012
Title KO1
Sample type RNA
 
Source name KO_embryonic heart
Organism Mus musculus
Characteristics strain background: C57/BL6;129Ola mixed
genotype/variation: MesP1-cre:RBPJlox/lox (KO)
age: 22-24somites
developmental stage: E9.25
tissue: embryonic heart
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion Illumina TotalPrep RNA Amplif Kit
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 5388876035_g
Data processing The data have been normalized using the BeadStudio Gene Expression Module v3.3.7, and quantile normalization without background correction. Not or low expressed transcripts have been removed by a minimum Illumina detection p-value < 0.05. The data filtering resulted in 14,788 of 25,697 probes.
 
Submission date Mar 26, 2012
Last update date Jun 21, 2012
Contact name Alexandra Klaus
E-mail(s) aklaus@mdc-berlin.de
Phone +49 30 9406 3791
Fax +49 30 9406 2656
Organization name MDC (Max Delbrück Center)
Department Signal Transduction, Invasion and Metastasis of Epithelial Cells
Lab Prof.Walter Birchmeier
Street address Robert-Roessle-Str.10
City Berlin
State/province Berlin
ZIP/Postal code 13125
Country Germany
 
Platform ID GPL6885
Series (1)
GSE36804 Expression analysis of genes regulated by RBPJ (Notch) and Axin2 (Wnt) mediated signaling in mouse cardiogenesis at E9.25

Data table header descriptions
ID_REF
VALUE quantile normalized (without background correction)

Data table
ID_REF VALUE
ILMN_1212607 204.9066
ILMN_1212612 161.6352
ILMN_1212632 318.4534
ILMN_1212636 11327.05
ILMN_1212637 3048.695
ILMN_1212645 199.6162
ILMN_1212648 563.4592
ILMN_1212653 345.2287
ILMN_1212672 1180.551
ILMN_1212682 212.4636
ILMN_1212692 740.6295
ILMN_1212693 431.3218
ILMN_1212702 64851.5
ILMN_1212703 243.374
ILMN_1212717 550.4937
ILMN_1212720 1293.215
ILMN_1212759 719.8389
ILMN_1212791 212.2928
ILMN_1212794 218.8144
ILMN_1212823 199.4474

Total number of rows: 14788

Table truncated, full table size 316 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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