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Sample GSM901277 Query DataSets for GSM901277
Status Public on Jun 21, 2012
Title KO3
Sample type RNA
 
Source name KO_embryonic heart
Organism Mus musculus
Characteristics strain background: C57/BL6;129Ola mixed
genotype/variation: MesP1-cre:RBPJlox/lox (KO)
age: 22-24somites
developmental stage: E9.25
tissue: embryonic heart
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion Illumina TotalPrep RNA Amplif Kit
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 5388876035_h
Data processing The data have been normalized using the BeadStudio Gene Expression Module v3.3.7, and quantile normalization without background correction. Not or low expressed transcripts have been removed by a minimum Illumina detection p-value < 0.05. The data filtering resulted in 14,788 of 25,697 probes.
 
Submission date Mar 26, 2012
Last update date Jun 21, 2012
Contact name Alexandra Klaus
E-mail(s) aklaus@mdc-berlin.de
Phone +49 30 9406 3791
Fax +49 30 9406 2656
Organization name MDC (Max Delbrück Center)
Department Signal Transduction, Invasion and Metastasis of Epithelial Cells
Lab Prof.Walter Birchmeier
Street address Robert-Roessle-Str.10
City Berlin
State/province Berlin
ZIP/Postal code 13125
Country Germany
 
Platform ID GPL6885
Series (1)
GSE36804 Expression analysis of genes regulated by RBPJ (Notch) and Axin2 (Wnt) mediated signaling in mouse cardiogenesis at E9.25

Data table header descriptions
ID_REF
VALUE quantile normalized (without background correction)

Data table
ID_REF VALUE
ILMN_1212607 167.8971
ILMN_1212612 159.7635
ILMN_1212632 286.602
ILMN_1212636 10886.31
ILMN_1212637 2804.902
ILMN_1212645 232.0574
ILMN_1212648 637.021
ILMN_1212653 326.6616
ILMN_1212672 1000.752
ILMN_1212682 175.8595
ILMN_1212692 810.9619
ILMN_1212693 502.3373
ILMN_1212702 61238.79
ILMN_1212703 233.9108
ILMN_1212717 547.5524
ILMN_1212720 1222.586
ILMN_1212759 586.3629
ILMN_1212791 231.987
ILMN_1212794 250.5869
ILMN_1212823 281.1226

Total number of rows: 14788

Table truncated, full table size 316 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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