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Sample GSM91131 Query DataSets for GSM91131
Status Public on Jan 06, 2007
Title larvae_roX1roX2 mutant_3
Sample type RNA
 
Source name Larvae
Organism Drosophila melanogaster
Characteristics Gender: male
Stage: third instar larvae
Genotype: y+ w roX1- roX2-/ Y
Extracted molecule total RNA
Extraction protocol TRIzol standard protocol
Label Biotin
Label protocol Affymetrix GeneChip® Expression Analysis Technical Manual
 
Hybridization protocol Affymetrix GeneChip® Expression Analysis Technical Manual
Scan protocol Affymetrix GeneChip® Expression Analysis Technical Manual
Description Total RNA was prepared from roX1- roX2- male third instar larvae. SMC17A was used for the roX1 mutant, which is described in Deng et al., 2005.
Data processing The Chip Image was analysed using GCOS 1.2 from Affymetrix.
 
Submission date Jan 06, 2006
Last update date Aug 28, 2018
Contact name Xinxian Deng
E-mail(s) av4849@wayne.edu
Phone 313-577-3450
Fax 313-577-6891
Organization name Wayne State University
Department Biological Sciences
Street address 5047 Gullen Mall
City Detroit
State/province MI
ZIP/Postal code 48202
Country USA
 
Platform ID GPL1322
Series (1)
GSE3990 roX RNAs are required for up-regulation of male X chromosome in Drosophila.
Relations
Reanalyzed by GSE119084

Data table header descriptions
ID_REF
VALUE Probeset intensity from array_roX mutant_replicate3
ABS_CALL Probesets are sorted in Affymetrix PM-MM (Perfect match- Mismatch) mode. Present call means specific-binding. Absent call means non-specific-binding.

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 171.398 P
AFFX-BioB-M_at 214.533 P
AFFX-BioB-3_at 215.224 P
AFFX-BioC-5_at 402.951 P
AFFX-BioC-3_at 399.845 P
AFFX-BioDn-5_at 1376.01 P
AFFX-BioDn-3_at 2261.39 P
AFFX-CreX-5_at 5493.86 P
AFFX-CreX-3_at 5167.2 P
AFFX-DapX-5_at 9.70448 A
AFFX-DapX-M_at 2.77905 A
AFFX-DapX-3_at 4.38469 A
AFFX-LysX-5_at 2.07116 A
AFFX-LysX-M_at 167.946 A
AFFX-LysX-3_at 15.2861 P
AFFX-PheX-5_at 11.5823 A
AFFX-PheX-M_at 37.1509 A
AFFX-PheX-3_at 20.4489 A
AFFX-ThrX-5_at 11.8081 A
AFFX-ThrX-M_at 9.95242 A

Total number of rows: 18952

Table truncated, full table size 395 Kbytes.




Supplementary file Size Download File type/resource
GSM91131.cel.gz 3.3 Mb (ftp)(http) CEL

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