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Sample GSM91418 Query DataSets for GSM91418
Status Public on May 10, 2006
Title control tumor vs SNU-601 #1
Sample type RNA
 
Channel 1
Source name xenograft control tumor
Organism Homo sapiens
Characteristics total RNA from xenograft tumor of SNU-601-pcDNA3.1
Extracted molecule total RNA
Extraction protocol RNeasy midi-prep (Qiagen, Chatsworth, CA
Label Cy5
Label protocol Genisphere 3DNA Expression Array Detection Kit (Genisphere, Hatfield, PA)
 
Channel 2
Source name SNU-601
Organism Homo sapiens
Characteristics total RNA from SnU-601 cells
Extracted molecule total RNA
Extraction protocol RNeasy midi-prep (Qiagen, Chatsworth, CA)
Label Cy3
Label protocol Genisphere 3DNA Expression Array Detection Kit (Genisphere, Hatfield, PA)
 
 
Hybridization protocol Genisphere 3DNA Expression Array Detection Kit (Genisphere, Hatfield, PA)
Scan protocol GenePix 4000B Scanner (Axon Instruments)
Description GenePix Pro 4.0 program (Axon Instruments)
Data processing print-tip Lowess method (bioconductor.org)
 
Submission date Jan 10, 2006
Last update date Jan 10, 2006
Contact name Mirang Kim
E-mail(s) mirang@kribb.re.kr
Phone 82-42-879-8124
Fax 82-42-879-8119
Organization name KRIBB
Department human genome center
Lab human genomics
Street address 52 Eoeun-dong
City Daejeon
ZIP/Postal code 305-333
Country South Korea
 
Platform ID GPL2913
Series (1)
GSE4003 Microarray analysis of LRRC3B stable cell derived xenograft tumors

Data table header descriptions
ID_REF
VALUE log2 of channel1/channel2 ratio

Data table
ID_REF VALUE
1 0.129697907
2 0.265520853
3 0.094102314
4 0.268113307
5 0.018191781
6 -0.510971328
7 -0.426002272
8 0.77894598
9 0.234823118
10 0.001510687
11 0.017477219
12 0.356310052
13 0.05059054
14 0.499575697
15 0.119316628
16 0.031361973
17 -0.479526191
18 -0.502757185
19
20 -0.056100063

Total number of rows: 24288

Table truncated, full table size 423 Kbytes.




Supplementary file Size Download File type/resource
GSM91418.gpr.gz 2.1 Mb (ftp)(http) GPR

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