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Sample GSM915468 Query DataSets for GSM915468
Status Public on Apr 20, 2012
Title ulcerative colitis with neoplasia_UCD11
Sample type RNA
 
Source name ulcerative colitis with neoplasia
Organism Homo sapiens
Characteristics tissue: colon biopsie
Extracted molecule total RNA
Extraction protocol Rneasy kit (Qiagen, Hilden, Germany)
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
 
Hybridization protocol Following fragmentation, cRNA were hybridized for 16 hr at 45C on Affymetrix human gut microbiota community GeneChip, then washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
Description S49
Gene expression data from human colon biopsy
Data processing Quality check and Robust Multichip Normalization using R/Bioconductor affy package
 
Submission date Apr 16, 2012
Last update date Apr 20, 2012
Contact name Yong Huang
E-mail(s) yongh@uchicago.edu
Phone 773-834-0832
Organization name University of Chicago
Department Medicine
Street address 900 East 57th Street
City Chicago
State/province IL
ZIP/Postal code 60637
Country USA
 
Platform ID GPL13158
Series (1)
GSE37283 Gene Expression Changes in Non-Dysplastic Mucosa from Patients with Ulcerative Colitis Harboring Remote Neoplastic Lesions

Data table header descriptions
ID_REF
VALUE RMA-normalized signal intensity

Data table
ID_REF VALUE
1007_PM_s_at 7.514466382
1053_PM_at 5.812818687
117_PM_at 4.310773272
121_PM_at 5.934144063
1255_PM_g_at 2.645059169
1294_PM_at 5.579260248
1316_PM_at 3.724061972
1320_PM_at 3.545808338
1405_PM_i_at 7.001241442
1431_PM_at 3.276692223
1438_PM_at 4.175521795
1487_PM_at 6.053758293
1494_PM_f_at 3.221130435
1552256_PM_a_at 5.791005027
1552257_PM_a_at 6.535662178
1552258_PM_at 3.633480096
1552261_PM_at 3.421227976
1552263_PM_at 6.79740927
1552264_PM_a_at 7.766906376
1552266_PM_at 3.545532667

Total number of rows: 54613

Table truncated, full table size 1370 Kbytes.




Supplementary file Size Download File type/resource
GSM915468_UCD11.CEL.gz 2.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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