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Sample GSM916657 Query DataSets for GSM916657
Status Public on Jan 01, 2013
Title testis_wt_rep4
Sample type RNA
 
Source name testis
Organism Mus musculus
Characteristics strain: C57BL/6J
tissue: testis
genotype/variation: wt
age: 27 weeks
mouse id: 1408
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description SAMPLE 4
replicate 4
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
 
Submission date Apr 17, 2012
Last update date Jan 01, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum München GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL6885
Series (1)
GSE37359 Genome-wide expression profiling analysis of a Sphingomyelin Synthase 1 mutant mouse model

Data table header descriptions
ID_REF
VALUE cubic spline normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 291.4624 0
ILMN_2721178 94.92085 0.002506266
ILMN_3033922 222.2419 0
ILMN_3092673 649.4448 0
ILMN_2816356 10.01541 0.1578947
ILMN_2808939 131.2725 0.001253133
ILMN_2634564 87.69395 0.003759399
ILMN_2737647 18.585 0.0764411
ILMN_2734484 102.1372 0.002506266
ILMN_2952292 8.570753 0.1842105
ILMN_2699078 1.686919 0.4899749
ILMN_1213681 372.6696 0
ILMN_2735413 12.57466 0.1265664
ILMN_2735415 -6.784341 0.9962406
ILMN_2891688 107.285 0.002506266
ILMN_2637698 193.8602 0
ILMN_2674228 53.27977 0.0112782
ILMN_2601546 0.03449084 0.650376
ILMN_1230831 -0.4154092 0.7117795
ILMN_2848071 6.34669 0.2431078

Total number of rows: 25697

Table truncated, full table size 775 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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