GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM92590
Query DataSets for GSM92590
Status
Public on Jul 01, 2006
Title
PBMCs from an HIV negative mother in Botswana (1)
Sample type
RNA
Source name
Human peripheral blood mononuclear cells (PBMCs) from an HIV negative Batswana woman
Organism
Homo sapiens
Characteristics
Botswana mother between 18 and 38 years old. HIV negative.
Extracted molecule
total RNA
Label
Biotin
Description
HIV seronegative
Data processing
Data scaled with GCOS
Submission date
Jan 14, 2006
Last update date
Sep 13, 2006
Contact name
Monty Montano
E-mail(s)
mmontano@bu.edu
Phone
617 414-4806
Fax
617 414-3561
URL
http://www.bmc.org/HIV-AIDS/MontyMontano.htm
Organization name
Boston Medical Center
Department
Medicine
Lab
Center for HIV-1/AIDS Care and Research
Street address
650 Albany Street, Bldg X, room 640
City
Boston
State/province
MA
ZIP/Postal code
02118
Country
USA
Platform ID
GPL571
Series (1)
GSE4124
Gene-expression profiling of HIV-1 infection and perinatal transmission in Botswana
Data table header descriptions
ID_REF
VALUE
GCOS scaled intensity values
DETECTION_P-VALUE
Quality of measurement
ABS_CALL
Present, absent or marginal call
SCALED_VALUE
Scaled intensity values
Data table
ID_REF
VALUE
DETECTION_P-VALUE
ABS_CALL
SCALED_VALUE
1007_s_at
15.4
0.397994
A
146.7
1053_at
7.4
0.267463
A
70.5
117_at
97.9
0.000388
P
931.6
121_at
52.1
0.048995
P
495.4
1255_g_at
0.6
0.602023
A
6
1294_at
180.9
0.000959
P
1721
1316_at
17.6
0.017001
P
167.8
1320_at
1.8
0.810313
A
17
1405_i_at
1593.9
0.000491
P
15163.9
1431_at
0.7
0.541184
A
7.1
1438_at
2.1
0.715285
A
20.3
1487_at
46.9
0.035163
P
446.6
1494_f_at
14.7
0.043968
P
140.3
1598_g_at
43.3
0.05447
M
412.4
160020_at
58.2
0.05447
M
553.4
1729_at
61.9
0.001141
P
588.7
177_at
7.4
0.218983
A
70.8
1773_at
8.5
0.302517
A
81
179_at
47.5
0.32083
A
452
1861_at
19
0.031336
P
181.2
Total number of rows:
22277
Table truncated, full table size
690 Kbytes
.
Supplementary data files not provided
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
