GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM94334
Query DataSets for GSM94334
Status
Public on Jul 01, 2006
Title
PBMCs from an HIV positive transmitter mother in Botswana (2)
Sample type
RNA
Source name
Human peripheral blood mononuclear cells (PBMCs) from an HIV positive Batswana woman
Organism
Homo sapiens
Characteristics
Botswana mother between 17 and 44 years old. HIV positive. Transmitted virus to child.
Extracted molecule
total RNA
Label
biotin
Description
HIV seropositive and drug naive
HIV seropositive transmitter mothers
Data processing
Data scaled with GCOS
Submission date
Jan 30, 2006
Last update date
Sep 13, 2006
Contact name
Monty Montano
E-mail(s)
mmontano@bu.edu
Phone
617 414-4806
Fax
617 414-3561
URL
http://www.bmc.org/HIV-AIDS/MontyMontano.htm
Organization name
Boston Medical Center
Department
Medicine
Lab
Center for HIV-1/AIDS Care and Research
Street address
650 Albany Street, Bldg X, room 640
City
Boston
State/province
MA
ZIP/Postal code
02118
Country
USA
Platform ID
GPL571
Series (1)
GSE4124
Gene-expression profiling of HIV-1 infection and perinatal transmission in Botswana
Data table header descriptions
ID_REF
VALUE
GCOS scaled intensity values
DETECTION_P-VALUE
Quality of measurement
ABS_CALL
Present, absent or marginal call
SCALED_VALUE
Scaled intensity values
Data table
ID_REF
VALUE
DETECTION_P-VALUE
ABS_CALL
SCALED_VALUE
1007_s_at
10.6
0.339558
A
337.7138634
1053_at
4.9
0.107263
A
156.1130123
117_at
78.6
0.000673
P
2504.180157
121_at
18.9
0.048995
P
602.1501903
1255_g_at
0.8
0.621816
A
25.48783874
1294_at
36.6
0.021866
P
1166.068623
1316_at
8.2
0.127645
A
261.2503471
1320_at
1.2
0.933135
A
38.23175812
1405_i_at
745.9
0.000491
P
23764.22365
1431_at
3.9
0.043968
P
124.2532139
1438_at
1.9
0.458816
A
60.53361702
1487_at
17.6
0.066865
A
560.7324524
1494_f_at
8.8
0.089405
A
280.3662262
1598_g_at
15.7
0.162935
A
500.1988354
160020_at
14.9
0.05447
M
474.7109966
1729_at
5.4
0.284747
A
172.0429115
177_at
6.7
0.162935
A
213.4606495
1773_at
1.4
0.47938
A
44.6037178
179_at
15.5
0.438361
A
493.8268757
1861_at
11.1
0.019304
P
353.6437626
Total number of rows:
22277
Table truncated, full table size
825 Kbytes
.
Supplementary data files not provided
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
