GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM94345
Query DataSets for GSM94345
Status
Public on Jul 01, 2006
Title
PBMCs from an HIV positive transmitter mother in Botswana (10)
Sample type
RNA
Source name
Human peripheral blood mononuclear cells (PBMCs) from an HIV positive Batswana woman
Organism
Homo sapiens
Characteristics
Botswana mother between 17 and 44 years old. HIV positive. Transmitted virus to child.
Extracted molecule
total RNA
Label
Biotin
Description
HIV seropositive and drug naive
HIV seropositive transmitter mothers
Data processing
Data scaled with GCOS
Submission date
Jan 30, 2006
Last update date
Sep 13, 2006
Contact name
Monty Montano
E-mail(s)
mmontano@bu.edu
Phone
617 414-4806
Fax
617 414-3561
URL
http://www.bmc.org/HIV-AIDS/MontyMontano.htm
Organization name
Boston Medical Center
Department
Medicine
Lab
Center for HIV-1/AIDS Care and Research
Street address
650 Albany Street, Bldg X, room 640
City
Boston
State/province
MA
ZIP/Postal code
02118
Country
USA
Platform ID
GPL571
Series (1)
GSE4124
Gene-expression profiling of HIV-1 infection and perinatal transmission in Botswana
Data table header descriptions
ID_REF
VALUE
GCOS scaled intensity values
DETECTION_P-VALUE
Quality of measurement
ABS_CALL
Present, absent or marginal call
SCALED_VALUE
Scaled intensity values
Data table
ID_REF
VALUE
DETECTION_P-VALUE
ABS_CALL
SCALED_VALUE
1007_s_at
1.9
0.715253
A
44.8856
1053_at
5.2
0.218983
A
122.8448
117_at
88.1
0.000266
P
2081.2744
121_at
18.5
0.035163
P
437.044
1255_g_at
1.4
0.479367
A
33.0736
1294_at
67.2
0.002228
P
1587.5328
1316_at
6
0.060419
M
141.744
1320_at
3.2
0.60204
A
75.5968
1405_i_at
1961.1
0.000491
P
46329.0264
1431_at
1.1
0.621894
A
25.9864
1438_at
2
0.32083
A
47.248
1487_at
21.4
0.098054
A
505.5536
1494_f_at
5.6
0.175989
A
132.2944
1598_g_at
19.5
0.127645
A
460.668
160020_at
8.8
0.060419
M
207.8912
1729_at
16.6
0.024711
P
392.1584
177_at
4.8
0.218983
A
113.3952
1773_at
0.8
0.660544
A
18.8992
179_at
20.2
0.127645
A
477.2048
1861_at
3.2
0.541184
A
75.5968
Total number of rows:
22277
Table truncated, full table size
748 Kbytes
.
Supplementary data files not provided
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
