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GEO accession:
Sample GSM94384
Query DataSets for GSM94384
Status
Public on May 15, 2006
Title
Rat Central Corneal Epithelium
Sample type
SAGE
Anchor
NlaIII
Tag Count
40691
Tag Length
10
Source name
6-week male Wister rats
Organism
Rattus norvegicus
Characteristics
16 eyes, 6-week male Wister rats were used.
Extracted molecule
total RNA
Extraction protocol
SNAP total RNA isolation kit (Invitrogen, Carlsbad, CA)
Description
Central region of the cornea was marked with 2.5 mm diameter trephine (Storz), and corneal epithelium was scraped by miniature scalpel.
Data processing
SAGE2000
Submission date
Jan 30, 2006
Last update date
Nov 19, 2008
Contact name
Hagit Ulanovsky
E-mail(s)
hu8z@nih.gov
Phone
301-402-4987
Organization name
NEI
Lab
LMDB
Street address
7 Memorial Dr, room 135
City
Bethedsa
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL23
Series (1)
GSE4121
Limbal and Central Corneal Epithelia
Data table header descriptions
TAG
COUNT
TPM
tags per million
Data table
TAG
COUNT
TPM
AAAAAAAAAA
3
73.73
AAAAAAAAAG
1
24.58
AAAAACAAGT
1
24.58
AAAAACACCT
0
0.00
AAAAATCATC
12
294.91
AAAAATGGAT
4
98.30
AAAACAGTGG
18
442.36
AAAACATTCT
1
24.58
AAAACCAGCT
0
0.00
AAAACTCCAC
0
0.00
AAAACTGAAG
2
49.15
AAAACTGCAA
6
147.45
AAAACTGGCA
1
24.58
AAAACTGTCT
1
24.58
AAAAGATACT
1
24.58
AAAAGGCTTT
4
98.30
AAAATAAAAA
5
122.88
AAAATCAAGT
0
0.00
AAAATCACAG
1
24.58
AAAATGCTGA
0
0.00
Total number of rows:
8551
Table truncated, full table size
157 Kbytes
.
Supplementary data files not provided
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