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Sample GSM948840 Query DataSets for GSM948840
Status Public on Apr 22, 2013
Title testis_wt_replicate1
Sample type RNA
Source name testis
Organism Mus musculus
Characteristics age: 12 weeks
mouse id: IC1015 +/+
genotype/variation: wildtype
strain: C57BL/6J-129ola-Fvb
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 1
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
Submission date Jun 15, 2012
Last update date Apr 22, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE38737 Genome-wide expression profiling analysis of a SMC6 mutant mouse model

Data table header descriptions
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 271.2 0
ILMN_2721178 80.11317 0.001253133
ILMN_3033922 250.4006 0
ILMN_3092673 853.7803 0
ILMN_2816356 31.98738 0.02882206
ILMN_2808939 211.0717 0
ILMN_2634564 160.5329 0
ILMN_2737647 6.153944 0.2293233
ILMN_2734484 362.8512 0
ILMN_2952292 9.596663 0.1629073
ILMN_2699078 -1.328841 0.6766917
ILMN_1213681 432.5516 0
ILMN_2735413 -2.030584 0.7907268
ILMN_2735415 0.1562222 0.5288221
ILMN_2891688 197.6678 0
ILMN_2637698 303.9541 0
ILMN_2674228 94.92032 0
ILMN_2601546 1.211123 0.4385965
ILMN_1230831 8.63664 0.1741855
ILMN_2848071 32.60826 0.02631579

Total number of rows: 25697

Table truncated, full table size 741 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Raw data are available on Series record

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