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Sample GSM948842 Query DataSets for GSM948842
Status Public on Apr 22, 2013
Title testis_wt_replicate3
Sample type RNA
 
Source name testis
Organism Mus musculus
Characteristics age: 12 weeks
mouse id: IC1012 +/-
genotype/variation: wildtype
strain: C57BL/6J-129ola-Fvb
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 3
SAMPLE 3
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
 
Submission date Jun 15, 2012
Last update date Apr 22, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL6885
Series (1)
GSE38737 Genome-wide expression profiling analysis of a SMC6 mutant mouse model

Data table header descriptions
ID_REF
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 288.0528 0
ILMN_2721178 102.0029 0
ILMN_3033922 241.0481 0
ILMN_3092673 758.5707 0
ILMN_2816356 21.63399 0.05137845
ILMN_2808939 192.0074 0
ILMN_2634564 183.1109 0
ILMN_2737647 10.77891 0.131579
ILMN_2734484 418.2273 0
ILMN_2952292 8.095396 0.1804511
ILMN_2699078 -1.494221 0.7142857
ILMN_1213681 423.0378 0
ILMN_2735413 8.71375 0.1679198
ILMN_2735415 4.537285 0.283208
ILMN_2891688 218.8301 0
ILMN_2637698 285.6909 0
ILMN_2674228 91.92897 0.001253133
ILMN_2601546 7.840188 0.1842105
ILMN_1230831 -0.08606772 0.5689223
ILMN_2848071 9.351028 0.160401

Total number of rows: 25697

Table truncated, full table size 748 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Raw data are available on Series record

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