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Sample GSM948843 Query DataSets for GSM948843
Status Public on Apr 22, 2013
Title testis_wt_replicate4
Sample type RNA
 
Source name testis
Organism Mus musculus
Characteristics age: 12 weeks
mouse id: IC1017 +/-
genotype/variation: wildtype
strain: C57BL/6J-129ola-Fvb
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 4
SAMPLE 4
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
 
Submission date Jun 15, 2012
Last update date Apr 22, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL6885
Series (1)
GSE38737 Genome-wide expression profiling analysis of a SMC6 mutant mouse model

Data table header descriptions
ID_REF
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 254.9502 0
ILMN_2721178 116.4569 0
ILMN_3033922 282.6617 0
ILMN_3092673 780.6207 0
ILMN_2816356 53.90223 0.003759399
ILMN_2808939 178.8864 0
ILMN_2634564 173.5674 0
ILMN_2737647 5.195445 0.254386
ILMN_2734484 440.8235 0
ILMN_2952292 7.8476 0.1716792
ILMN_2699078 -3.440848 0.8834587
ILMN_1213681 428.3253 0
ILMN_2735413 -1.518071 0.7368421
ILMN_2735415 5.040636 0.2593985
ILMN_2891688 198.5175 0
ILMN_2637698 258.4273 0
ILMN_2674228 107.7426 0
ILMN_2601546 7.637966 0.1729323
ILMN_1230831 -1.671072 0.7493734
ILMN_2848071 5.704978 0.2368421

Total number of rows: 25697

Table truncated, full table size 743 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Raw data are available on Series record

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