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Sample GSM948844 Query DataSets for GSM948844
Status Public on Apr 22, 2013
Title testis_SMC6_replicate1
Sample type RNA
Source name testis
Organism Mus musculus
Characteristics age: 12 weeks
mouse id: IC1011 -/-
genotype/variation: SMC6 mutant
strain: C57BL/6J-129ola-Fvb
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 1
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
Submission date Jun 15, 2012
Last update date Apr 22, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE38737 Genome-wide expression profiling analysis of a SMC6 mutant mouse model

Data table header descriptions
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 298.0391 0
ILMN_2721178 97.75244 0
ILMN_3033922 268.4313 0
ILMN_3092673 786.6943 0
ILMN_2816356 13.49267 0.0914787
ILMN_2808939 218.0386 0
ILMN_2634564 181.6793 0
ILMN_2737647 -0.8244753 0.641604
ILMN_2734484 404.8103 0
ILMN_2952292 0.7303353 0.5012531
ILMN_2699078 -1.537228 0.7280702
ILMN_1213681 405.0754 0
ILMN_2735413 3.506513 0.3220551
ILMN_2735415 9.665438 0.1365915
ILMN_2891688 275.7398 0
ILMN_2637698 260.8718 0
ILMN_2674228 92.676 0
ILMN_2601546 8.303912 0.1666667
ILMN_1230831 -1.898312 0.7744361
ILMN_2848071 5.553109 0.235589

Total number of rows: 25697

Table truncated, full table size 739 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Raw data are available on Series record

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