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Sample GSM948845 Query DataSets for GSM948845
Status Public on Apr 22, 2013
Title testis_SMC6_replicate2
Sample type RNA
Source name testis
Organism Mus musculus
Characteristics age: 12 weeks
mouse id: IC1013 -/-
genotype/variation: SMC6 mutant
strain: C57BL/6J-129ola-Fvb
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 2
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
Submission date Jun 15, 2012
Last update date Apr 22, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE38737 Genome-wide expression profiling analysis of a SMC6 mutant mouse model

Data table header descriptions
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 317.8055 0
ILMN_2721178 82.63143 0.001253133
ILMN_3033922 279.928 0
ILMN_3092673 779.812 0
ILMN_2816356 38.00245 0.01754386
ILMN_2808939 198.882 0
ILMN_2634564 150.3297 0
ILMN_2737647 5.615952 0.2142857
ILMN_2734484 411.4702 0
ILMN_2952292 5.693937 0.2105263
ILMN_2699078 -1.766847 0.7330827
ILMN_1213681 459.9152 0
ILMN_2735413 3.724438 0.273183
ILMN_2735415 9.05842 0.131579
ILMN_2891688 254.1641 0
ILMN_2637698 261.5014 0
ILMN_2674228 89.97504 0
ILMN_2601546 11.39051 0.1090226
ILMN_1230831 -3.523545 0.9047619
ILMN_2848071 2.766872 0.3258145

Total number of rows: 25697

Table truncated, full table size 744 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Raw data are available on Series record

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