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Sample GSM948846 Query DataSets for GSM948846
Status Public on Apr 22, 2013
Title testis_SMC6_replicate3
Sample type RNA
Source name testis
Organism Mus musculus
Characteristics age: 12 weeks
mouse id: IC1016 -/-
genotype/variation: SMC6 mutant
strain: C57BL/6J-129ola-Fvb
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 3
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
Submission date Jun 15, 2012
Last update date Apr 22, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE38737 Genome-wide expression profiling analysis of a SMC6 mutant mouse model

Data table header descriptions
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 331.0716 0
ILMN_2721178 100.7726 0
ILMN_3033922 259.1566 0
ILMN_3092673 816.4896 0
ILMN_2816356 49.85392 0.01002506
ILMN_2808939 183.6021 0
ILMN_2634564 176.9468 0
ILMN_2737647 10.08725 0.1428571
ILMN_2734484 335.8574 0
ILMN_2952292 6.223122 0.2205514
ILMN_2699078 -2.583686 0.8320802
ILMN_1213681 429.2624 0
ILMN_2735413 17.35006 0.07017544
ILMN_2735415 -0.4719888 0.5964912
ILMN_2891688 216.331 0
ILMN_2637698 292.0828 0
ILMN_2674228 101.7021 0
ILMN_2601546 2.291902 0.3709273
ILMN_1230831 1.106567 0.4536341
ILMN_2848071 19.46413 0.05764411

Total number of rows: 25697

Table truncated, full table size 743 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Raw data are available on Series record

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