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Sample GSM948847 Query DataSets for GSM948847
Status Public on Apr 22, 2013
Title testis_SMC6_replicate4
Sample type RNA
Source name testis
Organism Mus musculus
Characteristics age: 12 weeks
mouse id: IC1018 -/-
genotype/variation: SMC6 mutant
strain: C57BL/6J-129ola-Fvb
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 4
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
Submission date Jun 15, 2012
Last update date Apr 22, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE38737 Genome-wide expression profiling analysis of a SMC6 mutant mouse model

Data table header descriptions
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 287.9311 0
ILMN_2721178 105.3804 0
ILMN_3033922 255.768 0
ILMN_3092673 747.8159 0
ILMN_2816356 32.25307 0.03258145
ILMN_2808939 217.0231 0
ILMN_2634564 181.6286 0
ILMN_2737647 32.61935 0.03007519
ILMN_2734484 384.8032 0
ILMN_2952292 22.02369 0.05764411
ILMN_2699078 2.744241 0.3546366
ILMN_1213681 415.4898 0
ILMN_2735413 4.903549 0.2619048
ILMN_2735415 28.28836 0.04010025
ILMN_2891688 219.5807 0
ILMN_2637698 262.9681 0
ILMN_2674228 109.4683 0
ILMN_2601546 7.083569 0.1954887
ILMN_1230831 14.98078 0.1090226
ILMN_2848071 26.11061 0.04761905

Total number of rows: 25697

Table truncated, full table size 746 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Raw data are available on Series record

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