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Sample GSM948848 Query DataSets for GSM948848
Status Public on Apr 22, 2013
Title spleen_wt_replicate1
Sample type RNA
Source name spleen
Organism Mus musculus
Characteristics age: 12 weeks
mouse id: IC1015 +/+
genotype/variation: wildtype
strain: C57BL/6J-129ola-Fvb
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 1
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
Submission date Jun 15, 2012
Last update date Apr 22, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE38737 Genome-wide expression profiling analysis of a SMC6 mutant mouse model

Data table header descriptions
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1680.20 0
ILMN_2721178 392.4893 0
ILMN_3033922 304.8748 0
ILMN_3092673 2036.301 0
ILMN_2816356 4.594588 0.2982456
ILMN_2808939 498.6121 0
ILMN_2634564 175.576 0
ILMN_2737647 2.20488 0.4310777
ILMN_2734484 113.0432 0
ILMN_2952292 90.75077 0.002506266
ILMN_2699078 0.6342761 0.5451128
ILMN_1213681 195.7856 0
ILMN_2735413 5.194275 0.2869674
ILMN_2735415 3.607888 0.3496241
ILMN_2891688 423.0215 0
ILMN_2637698 1134.98 0
ILMN_2674228 342.2249 0
ILMN_2601546 0.1887297 0.5802005
ILMN_1230831 1.686169 0.4711779
ILMN_2848071 7.935149 0.226817

Total number of rows: 25697

Table truncated, full table size 748 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Raw data are available on Series record

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