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Sample GSM948849 Query DataSets for GSM948849
Status Public on Apr 22, 2013
Title spleen_wt_replicate2
Sample type RNA
Source name spleen
Organism Mus musculus
Characteristics age: 12 weeks
mouse id: IC1019 +/+
genotype/variation: wildtype
strain: C57BL/6J-129ola-Fvb
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 2
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
Submission date Jun 15, 2012
Last update date Apr 22, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE38737 Genome-wide expression profiling analysis of a SMC6 mutant mouse model

Data table header descriptions
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1489.217 0
ILMN_2721178 352.9352 0
ILMN_3033922 328.2187 0
ILMN_3092673 2187.052 0
ILMN_2816356 15.59556 0.1265664
ILMN_2808939 551.7013 0
ILMN_2634564 206.2674 0
ILMN_2737647 -2.436288 0.8521304
ILMN_2734484 136.2852 0.001253133
ILMN_2952292 114.9623 0.002506266
ILMN_2699078 2.451504 0.4398496
ILMN_1213681 172.5471 0
ILMN_2735413 -1.102365 0.7268171
ILMN_2735415 11.82177 0.1729323
ILMN_2891688 499.7976 0
ILMN_2637698 945.5717 0
ILMN_2674228 318.0212 0
ILMN_2601546 47.04403 0.01754386
ILMN_1230831 7.516928 0.245614
ILMN_2848071 24.1458 0.0802005

Total number of rows: 25697

Table truncated, full table size 759 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Raw data are available on Series record

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