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Sample GSM948850 Query DataSets for GSM948850
Status Public on Apr 22, 2013
Title spleen_wt_replicate3
Sample type RNA
 
Source name spleen
Organism Mus musculus
Characteristics age: 12 weeks
mouse id: IC1012 +/-
genotype/variation: wildtype
strain: C57BL/6J-129ola-Fvb
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 3
SAMPLE 11
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
 
Submission date Jun 15, 2012
Last update date Apr 22, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL6885
Series (1)
GSE38737 Genome-wide expression profiling analysis of a SMC6 mutant mouse model

Data table header descriptions
ID_REF
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1686.433 0
ILMN_2721178 472.2471 0
ILMN_3033922 380.4274 0
ILMN_3092673 1953.709 0
ILMN_2816356 2.334336 0.4310777
ILMN_2808939 450.6009 0
ILMN_2634564 230.4034 0
ILMN_2737647 2.233775 0.4373434
ILMN_2734484 123.9237 0
ILMN_2952292 88.95836 0.002506266
ILMN_2699078 -1.638441 0.7719298
ILMN_1213681 236.707 0
ILMN_2735413 10.57273 0.1704261
ILMN_2735415 -2.077756 0.802005
ILMN_2891688 401.3649 0
ILMN_2637698 1122.344 0
ILMN_2674228 327.6711 0
ILMN_2601546 15.8137 0.09273183
ILMN_1230831 -2.214242 0.8195488
ILMN_2848071 21.4997 0.0651629

Total number of rows: 25697

Table truncated, full table size 748 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Raw data are available on Series record

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